genome.fa.s8499.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008499.1 Hibiscus syriacus cultivar Beakdansim tig00111344_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  291584

Tables:   1   2   

This is table  2  of  2  ( 153 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154251--154380	59	2.2	59	85	10	176	37	10	2	50	1.49
154251--154422	59	2.9	58	79	11	165	37	9	2	50	1.47
154398--154444	25	1.9	25	86	4	69	44	2	0	53	1.12
154386--154453	24	2.7	25	76	13	68	38	4	0	57	1.19
171863--171932	34	2.1	34	100	0	140	37	21	11	30	1.89
172908--172980	37	2.0	37	84	10	98	47	4	1	46	1.30
179784--179877	30	3.1	30	100	0	188	48	19	12	19	1.80
180127--180167	21	2.0	21	95	0	73	51	9	19	19	1.74
181871--181987	31	3.8	31	75	6	103	32	12	9	45	1.75
186298--186360	30	2.1	30	81	0	72	33	36	3	26	1.73
197715--197796	32	2.6	32	86	3	103	35	18	12	34	1.88
198479--198525	21	2.3	21	85	3	60	23	14	25	36	1.93
202673--202717	18	2.4	18	79	17	56	42	24	13	20	1.87
204300--204328	12	2.3	13	94	5	51	31	0	0	68	0.89
209128--209175	14	3.4	14	97	0	78	31	35	10	22	1.88
212001--212038	2	19.0	2	100	0	76	50	0	0	50	1.00
212290--212361	33	2.1	34	94	2	128	52	12	6	27	1.64
221958--222101	60	2.4	60	87	2	191	37	20	3	38	1.70
221984--222075	29	3.1	29	67	11	78	35	22	2	39	1.67
221979--222139	60	2.7	59	82	7	164	35	24	3	37	1.71
222264--222428	59	2.8	60	82	4	210	44	4	19	31	1.72
222483--222517	15	2.2	17	90	10	56	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
222756--222784	6	4.8	6	100	0	58	51	0	0	48	1.00
232838--232881	21	2.1	21	83	8	54	20	15	25	38	1.92
252537--252604	28	2.4	28	82	5	73	25	13	2	58	1.49
252703--252742	2	20.0	2	100	0	80	50	0	0	50	1.00
274393--274460	23	3.0	22	74	18	68	50	4	0	45	1.22
274385--274477	42	2.2	41	80	14	109	50	4	1	44	1.28
276820--276908	22	4.0	22	85	2	108	41	13	11	33	1.80
276829--276920	22	4.2	21	79	19	82	41	14	13	31	1.83
283473--283533	23	2.8	22	76	14	72	45	4	0	49	1.23
283978--284043	28	2.4	28	100	0	132	28	25	12	33	1.92
284112--284153	20	2.1	20	100	0	84	45	26	23	4	1.73

Tables:   1   2

The End!