Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008501.1 Hibiscus syriacus cultivar Beakdansim tig00111353_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68816

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33--69
3
13.0
3
83
11
51
32
0
2
64
1.07
43--75
14
2.3
15
94
5
59
33
0
0
66
0.92
1847--1895
2
24.5
2
91
0
80
44
0
4
51
1.20
1849--1895
18
2.6
18
100
0
94
44
0
4
51
1.21
5708--5888
45
4.0
45
91
0
301
29
20
7
41
1.81
5796--5869
24
3.2
24
63
24
59
29
18
5
45
1.72
6010--6131
40
3.0
40
92
0
208
31
26
17
24
1.97
7961--8019
30
2.0
30
86
6
84
33
18
8
38
1.81
10067--10113
24
2.0
24
100
0
94
31
12
12
42
1.81
18934--18973
21
1.9
21
89
0
62
10
25
40
25
1.86
18955--19017
21
2.9
21
83
9
74
19
25
34
20
1.96
26142--26190
24
2.0
24
100
0
98
32
12
12
42
1.79
29199--29342
24
6.1
24
83
6
161
24
22
22
29
1.99
32435--32480
23
2.0
24
82
4
58
23
6
21
47
1.74
36217--36289
26
2.8
26
76
12
78
49
4
5
41
1.45
39615--40039
46
9.2
46
88
0
589
43
11
20
24
1.85
39615--40039
185
2.3
185
89
0
636
43
11
20
24
1.85
46752--47037
46
6.2
46
87
3
405
43
11
21
23
1.85
47309--47516
101
2.1
101
97
0
389
35
12
21
30
1.90
48432--48475
21
2.1
21
91
0
70
59
0
0
40
0.98
48881--48947
2
33.5
2
100
0
134
50
0
0
49
1.00
50347--50401
28
2.0
28
92
0
92
41
3
18
36
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52036--52171
74
1.9
71
86
7
193
36
10
7
45
1.66
52120--52218
45
2.2
45
83
5
119
41
12
6
40
1.67
52182--52257
20
3.8
20
94
0
125
34
17
6
42
1.75
52488--52786
77
3.9
76
80
4
305
35
16
10
37
1.83
52787--52816
2
15.0
2
100
0
60
50
0
0
50
1.00
54351--54396
20
2.2
20
84
7
56
17
6
2
73
1.14
54478--54525
4
11.8
4
80
10
53
29
2
0
68
1.01
54586--54669
30
2.8
29
75
13
80
14
10
1
73
1.15
54651--54682
14
2.2
15
94
5
57
12
12
0
75
1.06
63479--63508
9
3.3
9
95
0
51
73
0
26
0
0.84
63480--63518
15
2.7
15
92
4
62
79
0
20
0
0.73
63555--63604
26
1.9
26
88
8
75
76
0
22
2
0.89
63555--63604
14
3.8
13
82
12
66
76
0
22
2
0.89
63556--63604
19
2.4
21
83
10
66
77
0
20
2
0.87
63555--63601
7
7.0
7
79
18
55
74
0
23
2
0.93
64469--64895
124
3.5
124
86
4
603
33
25
16
24
1.95
67797--67839
19
2.3
19
100
0
86
30
25
16
27
1.97
67753--67884
64
2.1
64
97
0
246
29
25
12
32
1.93
67817--68091
45
6.1
45
85
2
347
29
23
10
36
1.88
68159--68706
81
6.8
81
86
2
753
31
22
11
34
1.89

Tables:   1

The End!