genome.fa.s8506.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008506.1 Hibiscus syriacus cultivar Beakdansim tig00111358_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1253200

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 681 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
225004--225051	17	2.9	16	71	17	53	50	0	2	47	1.12
225005--225051	15	2.8	18	71	18	55	51	0	2	46	1.13
229075--229118	18	2.5	16	80	20	52	54	2	0	43	1.12
231309--231336	2	14.0	2	100	0	56	50	0	0	50	1.00
241458--241565	14	7.1	15	76	15	105	34	19	4	41	1.72
241458--241564	29	3.5	29	79	14	117	34	19	3	42	1.69
241473--241569	49	2.0	50	95	2	178	38	18	4	39	1.70
242940--242987	17	2.9	17	87	6	64	4	10	35	50	1.56
243909--244543	318	2.0	316	88	3	873	27	18	6	47	1.72
249673--249763	41	2.2	41	98	0	173	40	12	13	34	1.81
251796--251857	3	21.0	3	96	3	117	66	0	0	33	0.92
252580--252678	34	2.9	34	77	14	87	43	0	9	47	1.35
252614--252680	34	1.9	35	88	8	102	43	0	4	52	1.21
252764--252814	20	2.6	21	81	12	63	27	19	1	50	1.58
261729--261768	17	2.3	18	80	20	50	20	7	2	70	1.24
266022--266071	7	7.4	7	82	12	52	72	0	20	8	1.10
266022--266073	14	3.8	14	82	12	72	71	0	21	7	1.11
266012--266086	28	2.7	27	79	6	96	74	0	20	5	1.00
266011--266080	11	5.7	11	73	26	61	74	0	20	5	1.02
269170--269283	42	2.7	42	90	0	174	23	20	20	35	1.95
269477--269547	22	3.3	21	71	15	65	22	19	19	38	1.94
269458--269569	42	2.7	42	92	1	181	21	19	22	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
269458--269525	20	3.3	20	71	16	68	20	17	22	39	1.92
269294--270156	304	2.8	303	89	3	1333	28	15	20	35	1.94
269764--269880	42	2.8	43	78	8	132	23	16	21	38	1.93
270061--270156	42	2.3	41	87	1	129	25	20	23	30	1.99
270634--270677	3	15.0	3	95	4	81	31	0	0	68	0.90
279264--279303	2	20.0	2	100	0	80	50	0	0	50	1.00
287903--287942	19	2.2	18	86	4	53	40	0	5	55	1.22
289404--289470	26	2.6	26	97	0	125	26	11	14	46	1.80
289626--289659	10	3.4	10	83	0	50	2	20	14	61	1.46
291616--291818	102	2.0	103	87	4	295	39	23	13	24	1.90
294584--294667	23	3.7	23	85	0	105	28	25	25	21	1.99
295640--295682	21	2.0	21	86	8	61	32	18	23	25	1.97
297507--297562	2	28.0	2	100	0	112	50	0	0	50	1.00
299213--299304	23	4.0	23	85	0	94	29	23	25	21	1.99
300278--300320	21	2.0	21	91	8	70	32	18	25	23	1.97
301600--301660	24	2.6	24	92	2	97	24	21	26	27	1.99
301839--301872	13	2.6	13	100	0	68	35	5	14	44	1.70
305725--305763	18	2.2	18	90	0	60	41	0	5	53	1.23
307225--307291	26	2.6	26	92	0	116	26	11	16	44	1.82
310101--310301	102	2.0	103	85	4	273	40	22	12	24	1.89
313056--313108	23	2.3	23	93	0	88	33	24	24	16	1.96
313064--313147	23	3.7	23	86	0	105	27	23	26	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
314121--314163	21	2.0	21	91	8	70	32	18	25	23	1.97
315980--316015	2	18.0	2	100	0	72	50	0	0	50	1.00
317661--317718	23	2.5	23	85	0	62	36	20	22	20	1.95
317676--317729	23	2.3	23	96	0	99	29	25	25	18	1.98
318692--318734	21	2.0	21	91	8	70	32	18	25	23	1.97
321893--321982	23	3.9	23	82	5	110	26	16	24	32	1.96
324264--324314	26	2.0	26	96	0	93	23	17	3	54	1.59
330563--330643	30	2.7	29	74	14	83	37	18	1	43	1.58
331233--331286	19	2.6	20	77	14	56	35	11	24	29	1.90
332627--332702	20	3.8	20	77	6	82	34	23	18	23	1.96
332626--332703	40	2.0	40	86	0	111	33	24	19	23	1.97
332736--332815	21	3.8	21	80	3	81	33	25	17	23	1.96
337488--337548	24	2.6	23	76	5	68	27	21	27	22	1.99
343725--343794	3	23.3	3	71	5	52	40	1	1	57	1.17
351717--351783	32	2.1	32	94	0	116	47	19	13	19	1.82
355602--355994	45	8.7	45	91	0	597	23	23	19	33	1.97
356174--356237	20	3.3	19	81	14	62	40	1	1	56	1.18
357840--357874	17	2.0	18	94	5	63	31	0	0	68	0.90
360888--361010	32	3.8	32	82	0	147	33	13	19	33	1.91
362968--363116	40	3.8	40	83	7	184	46	2	5	44	1.40
366524--366594	22	3.3	22	71	9	58	22	23	28	25	2.00
368976--369003	3	9.3	3	100	0	56	0	32	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
370822--370884	26	2.3	27	89	8	101	47	1	6	44	1.38
370832--370887	26	2.2	26	100	0	112	46	0	7	46	1.30
370876--370935	11	5.1	11	72	21	50	46	0	6	46	1.29
370850--370953	37	2.8	37	97	0	190	44	0	6	49	1.29
370924--370976	27	1.9	28	92	3	90	41	1	3	52	1.30
372255--372304	15	3.5	15	81	8	59	18	8	0	74	1.06
396367--396584	37	5.7	36	87	9	278	46	1	6	44	1.38
396367--396581	76	2.8	76	90	6	305	46	1	6	44	1.39
396547--396600	24	2.2	26	90	6	85	40	1	7	50	1.41
396624--396671	14	3.4	14	76	0	51	27	4	0	68	1.07
397252--397288	18	2.1	18	94	0	65	10	16	16	56	1.66
397254--397296	18	2.4	18	88	0	59	9	18	11	60	1.57
398559--398591	17	1.9	17	100	0	66	69	0	6	24	1.10
401076--401183	53	2.0	53	96	0	198	25	17	20	36	1.94
402739--402803	33	2.0	32	88	8	96	47	7	16	27	1.74
403186--403239	11	4.8	11	97	2	99	62	0	11	25	1.28
403729--404205	239	2.0	238	87	2	690	20	25	21	32	1.97
407815--407867	20	2.7	20	75	0	61	35	13	16	33	1.88
417172--417273	44	2.4	42	82	8	118	32	22	12	32	1.92
426213--426265	21	2.5	21	87	0	79	20	24	18	35	1.95
426255--426363	20	5.7	20	80	8	127	37	20	21	21	1.94
426290--426322	17	1.9	17	93	0	57	36	18	24	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
426268--426363	37	2.6	36	80	6	102	38	19	20	20	1.94
426350--426456	20	5.3	20	89	0	160	28	25	19	26	1.99
426608--426645	20	1.9	20	88	0	58	21	44	7	26	1.79
429757--429824	20	3.4	20	93	4	111	38	26	19	16	1.92
429907--429982	33	2.3	34	86	4	118	13	21	19	46	1.84
429907--430002	33	2.8	32	81	9	111	13	21	20	43	1.86
430110--430144	14	2.5	14	85	0	52	48	20	0	31	1.50
431475--431530	21	2.6	22	80	8	62	21	17	37	23	1.94
432012--432100	20	4.4	20	94	0	124	34	23	20	21	1.96
432137--432313	20	9.5	20	78	16	157	17	18	21	42	1.89
432157--432290	33	3.8	34	78	7	126	14	18	22	44	1.87
434192--434354	20	8.6	20	77	8	135	44	23	16	14	1.85
434195--434321	59	2.1	60	98	1	247	42	24	16	16	1.88
434192--434354	79	2.2	73	87	6	227	44	23	16	14	1.85
434689--434742	22	2.5	22	87	0	72	24	11	38	25	1.88
434940--435012	20	3.7	20	88	0	110	20	19	21	38	1.94
434922--435012	40	2.3	40	88	7	132	20	19	23	36	1.95
435009--435054	21	2.2	21	92	0	74	39	17	26	17	1.91
439928--440003	2	39.0	2	94	5	138	50	0	0	50	1.00
440512--441709	600	2.0	595	98	0	2308	34	11	14	39	1.81
443668--443760	31	2.9	32	75	10	93	54	5	4	35	1.43
443777--443844	25	2.7	26	82	13	88	54	0	2	42	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
444482--444529	19	2.5	19	86	3	60	33	29	16	20	1.95
444564--444607	21	2.0	22	95	4	81	22	22	15	38	1.92
444615--444747	20	6.7	20	66	13	67	28	25	18	27	1.98
445134--445214	19	3.9	19	73	17	72	32	29	4	33	1.79
445140--445225	19	4.0	21	69	20	63	34	27	4	32	1.78
446689--446801	35	3.2	34	86	5	154	42	22	0	34	1.60
447995--448050	19	2.9	19	84	5	78	32	30	14	23	1.94
448157--448393	20	11.7	20	70	12	117	33	24	16	24	1.96
448276--448386	41	2.7	41	94	0	195	38	27	13	20	1.90
448136--448330	61	3.2	60	69	11	155	34	23	17	24	1.96

Tables:   1   2   3   4   5   6