Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008514.1 Hibiscus syriacus cultivar Beakdansim tig00111377_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  567339

Tables:   1   2   3   

This is table  3  of  3  ( 265 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
518185--518220
19
1.9
19
88
5
56
55
22
0
22
1.44
522735--522759
4
6.2
4
100
0
50
24
28
0
48
1.52
526261--526285
2
12.5
2
100
0
50
52
0
0
48
1.00
530702--530734
15
2.2
15
100
0
66
6
12
69
12
1.35
538687--538716
15
2.1
14
93
6
51
16
0
6
76
0.99
541695--541754
27
2.3
27
85
8
79
81
8
8
1
0.93
541695--541754
26
2.3
27
85
2
77
81
8
8
1
0.93
541718--541755
13
2.9
13
85
11
51
84
5
10
0
0.77
542354--542396
22
2.0
22
95
0
77
34
27
13
23
1.93
542625--542649
12
2.1
12
100
0
50
36
8
8
48
1.62
542829--542864
18
2.0
18
88
0
54
16
8
36
38
1.79
543006--543064
29
2.0
29
100
0
118
35
13
27
23
1.92
543238--543372
36
3.8
36
73
7
96
24
20
15
40
1.91
543426--543503
36
2.2
36
88
0
111
29
21
15
33
1.94
543845--544067
64
3.5
65
88
3
310
34
25
18
21
1.96
543745--544195
235
1.9
230
91
4
728
35
25
18
20
1.95
543910--544245
171
2.0
171
93
0
584
34
25
19
21
1.96
544079--544209
65
2.0
66
91
4
212
35
27
18
19
1.95
543974--544175
106
1.9
104
86
6
255
36
26
17
19
1.94
545944--545973
15
2.1
14
93
6
51
16
0
6
76
0.99
549070--549121
12
4.3
12
85
0
77
40
15
1
42
1.58
549734--549775
18
2.4
17
80
11
57
69
2
0
28
1.01
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
560759--560819
29
2.1
30
93
3
106
47
6
3
42
1.45
560719--560894
73
2.4
73
94
4
302
50
4
2
42
1.37
560832--560893
30
2.1
30
96
0
115
48
6
1
43
1.38

Tables:   1   2   3

The End!