genome.fa.s8515.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008515.1 Hibiscus syriacus cultivar Beakdansim tig00111378_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  337978

Tables:   1   2   

This is table  1  of  2  ( 199 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
628--666	17	2.3	17	83	12	53	23	7	0	69	1.14
1740--1771	15	2.0	17	88	11	50	9	15	6	68	1.36
3658--3707	27	1.9	25	88	8	73	82	8	8	2	0.93
3658--3706	13	3.6	13	78	15	55	81	8	8	2	0.94
3658--3714	26	2.1	27	84	9	73	82	7	8	1	0.91
3678--3715	13	2.9	13	85	11	51	84	5	10	0	0.77
3658--3714	25	2.2	27	84	6	64	82	7	8	1	0.91
4314--4356	22	2.0	22	95	0	77	34	27	13	23	1.93
4585--4609	12	2.1	12	100	0	50	36	8	8	48	1.62
4789--4824	18	2.0	18	88	0	54	16	8	36	38	1.79
4965--5023	29	2.0	29	100	0	118	35	13	27	23	1.92
5197--5320	36	3.5	36	70	8	92	23	19	16	41	1.90
5383--5460	36	2.2	36	88	0	111	29	21	15	33	1.94
5801--6021	63	3.5	64	87	4	297	34	25	18	21	1.96
6033--6163	65	2.0	66	91	4	212	35	27	18	19	1.95
5702--6149	234	1.9	226	90	5	702	35	26	18	20	1.95
5928--6129	106	1.9	104	86	6	255	36	26	17	19	1.94
5865--6199	171	2.0	169	93	1	571	34	25	19	21	1.96
11007--11058	12	4.3	12	85	0	77	40	15	1	42	1.58
11091--11121	12	2.6	12	94	0	53	61	0	3	35	1.12
11673--11714	18	2.4	17	80	11	57	69	2	0	28	1.01
22681--22743	30	2.2	29	88	8	94	42	6	4	46	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22690--22751	30	2.1	30	93	0	106	46	6	3	43	1.45
22649--22826	74	2.4	74	96	1	322	50	4	2	42	1.37
22709--22795	44	2.0	44	90	4	140	52	4	3	39	1.39
22764--22825	30	2.1	30	96	0	115	48	6	1	43	1.38
34835--34862	11	2.5	11	100	0	56	28	21	0	50	1.49
36785--36882	34	2.9	34	93	0	169	18	8	25	47	1.76
56997--57045	2	25.5	2	91	8	84	46	0	0	53	1.00
58345--58378	16	2.1	17	88	5	52	47	0	2	50	1.16
73404--73479	2	38.5	2	97	2	145	48	0	0	51	1.00
80107--80149	20	2.2	20	87	8	61	37	0	0	62	0.95
82500--82529	3	10.0	3	100	0	60	66	0	0	33	0.92
83841--83918	26	3.0	23	77	17	57	47	2	0	50	1.15
83884--83934	20	2.5	20	80	6	57	50	0	1	47	1.12
84081--84157	8	9.5	8	76	17	54	46	1	0	51	1.09
88055--88107	12	4.5	11	75	15	52	16	16	15	50	1.78
88014--88122	24	4.5	24	77	6	98	20	16	15	47	1.82
98189--98263	28	2.7	28	100	0	150	53	0	2	44	1.14
101624--101670	23	2.1	22	84	4	58	36	10	19	34	1.86
102150--102208	23	2.6	23	88	0	82	40	15	5	38	1.69
101744--103878	477	4.5	482	96	1	3915	40	10	7	41	1.68
102623--102684	23	2.7	23	89	0	88	40	20	4	33	1.74
103105--103167	23	2.7	23	92	0	99	38	20	4	36	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101744--103878	959	2.2	955	97	1	4010	40	10	7	41	1.68
103582--103644	23	2.7	23	92	0	99	38	20	4	36	1.74
101744--104323	959	2.7	946	89	5	3397	40	10	7	41	1.67
103676--104379	225	3.1	226	95	3	1240	39	8	7	44	1.63
113408--113441	10	3.3	10	87	4	50	52	0	2	44	1.16
113785--113860	35	2.2	35	92	0	125	39	23	1	35	1.63
114257--114504	131	1.9	131	91	0	406	36	15	12	35	1.84
114971--115005	17	1.9	19	88	11	56	65	5	2	25	1.28
116424--116561	60	2.3	59	76	7	134	36	15	14	33	1.89
120669--120750	15	5.5	15	86	2	112	36	7	20	35	1.81
120663--120750	45	2.0	44	90	2	140	38	6	21	32	1.80
120669--120750	30	2.8	30	92	1	130	36	7	20	35	1.81
120733--120782	20	2.5	20	100	0	100	40	10	16	34	1.81
120983--121046	29	2.3	27	86	13	85	51	1	1	45	1.20
120981--121148	30	5.5	30	72	17	100	52	1	1	45	1.16
121013--121128	28	3.9	28	74	11	81	51	0	0	46	1.12
121069--121132	19	3.8	16	70	22	58	50	0	1	48	1.10
121101--121146	10	4.5	10	78	21	51	58	0	0	41	0.98
121102--121158	22	2.6	22	84	10	73	54	0	0	45	0.99
121109--121158	21	2.3	21	86	10	66	54	0	0	46	1.00
121350--121466	42	2.8	42	92	0	189	45	17	21	16	1.85
121352--121412	14	4.3	15	73	12	65	47	13	21	18	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135289--135326	17	2.3	17	86	13	53	36	7	0	55	1.29
135286--135327	16	2.4	18	77	22	54	35	7	0	57	1.26
135954--136094	75	1.9	75	89	0	219	43	11	15	29	1.82
136514--136552	16	2.3	17	86	8	53	48	0	17	33	1.48
136723--137092	157	2.3	159	84	3	460	48	5	17	28	1.69
138730--138762	2	16.5	2	100	0	66	48	0	0	51	1.00
139354--139386	16	2.1	16	100	0	66	57	24	12	6	1.57
139456--139516	16	3.8	16	95	0	113	55	22	13	8	1.64
140265--140320	14	4.3	14	82	17	75	51	25	14	8	1.70
140245--140319	24	3.1	24	90	3	107	54	21	12	12	1.69
140258--140305	10	4.4	10	78	19	51	54	22	12	10	1.68
142413--142566	66	2.3	66	89	0	227	27	14	25	31	1.95
142606--142677	15	4.9	15	91	1	119	36	6	20	36	1.80
142606--142686	30	2.7	30	94	1	137	38	6	19	35	1.77
142601--142686	45	1.9	44	92	2	145	40	5	19	33	1.76
142670--142739	20	3.5	20	94	0	122	40	8	14	37	1.76
142905--143007	29	3.5	29	80	17	99	52	1	0	44	1.18
142906--143072	29	5.9	27	71	17	94	50	1	1	46	1.16
143021--143064	22	2.0	23	86	4	63	54	0	0	45	0.99
143025--143081	21	2.6	22	81	10	64	52	0	0	47	1.00
142961--143081	54	2.3	51	77	19	133	50	0	0	47	1.12
143273--143389	42	2.8	42	97	0	216	45	17	21	16	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
143443--143568	66	1.9	66	85	3	173	28	11	23	35	1.91
144039--144071	17	1.9	17	93	0	57	54	0	12	33	1.37
147601--147651	26	2.0	26	84	7	68	11	29	0	58	1.33
154930--154981	2	26.0	2	100	0	104	50	0	0	50	1.00
156198--156245	23	2.1	23	88	0	69	35	12	18	33	1.89
156615--156668	23	2.5	20	75	18	54	42	18	1	37	1.61
156630--156687	23	2.5	23	91	0	89	37	18	6	36	1.78
158575--159240	183	3.7	184	95	2	1157	34	16	14	35	1.89
160582--160632	3	17.0	3	83	0	66	25	33	3	37	1.74
160582--160644	12	5.2	12	90	0	81	23	33	6	36	1.80
160586--160647	18	3.4	18	88	0	88	20	33	6	38	1.79
160586--160647	6	10.3	6	83	0	61	20	33	6	38	1.79
160752--160802	3	17.0	3	83	0	66	25	33	3	37	1.74
160752--160814	12	5.2	12	90	0	81	23	33	6	36	1.80
160756--160817	18	3.4	18	88	0	88	20	33	6	38	1.79
160756--160817	6	10.3	6	83	0	61	20	33	6	38	1.79
162260--163092	189	4.3	198	90	7	1356	32	15	14	37	1.88
165170--165214	20	2.2	20	76	4	54	17	13	8	60	1.58
165338--165383	19	2.4	19	86	13	67	17	17	10	54	1.70
165340--165398	20	3.0	19	80	14	66	16	15	15	52	1.75
165452--165884	221	2.0	220	91	4	701	39	7	8	44	1.62
167020--167060	17	2.4	17	88	12	57	39	2	0	58	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
171593--171706	60	1.9	59	82	3	140	36	11	10	41	1.76
172860--172885	6	4.3	6	100	0	52	0	0	15	84	0.62
175853--175909	23	2.5	24	74	8	64	26	7	12	54	1.63
179776--179818	20	2.3	19	88	8	61	37	9	27	25	1.87
183881--183975	41	2.3	41	94	0	163	21	34	13	30	1.92
188195--188246	26	2.0	25	85	10	70	46	19	3	30	1.68
188283--188312	4	7.5	4	100	0	60	76	0	23	0	0.78
188894--189164	133	2.0	134	87	4	397	35	6	6	51	1.54
189708--189754	24	2.0	24	86	0	67	61	2	4	31	1.27
190146--191065	460	2.0	456	98	0	1786	30	18	13	37	1.89

Tables:   1   2