genome.fa.s8515.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008515.1 Hibiscus syriacus cultivar Beakdansim tig00111378_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  337978

Tables:   1   2   

This is table  2  of  2  ( 199 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
197851--198357	150	3.3	154	79	8	528	28	19	6	45	1.75
199331--199478	78	1.9	77	93	4	253	36	17	14	31	1.90
201701--202241	267	2.0	270	98	1	1043	29	15	21	33	1.94
211570--212067	270	1.8	273	88	6	766	37	6	7	48	1.57
214075--214210	20	6.8	20	72	7	105	19	19	24	36	1.95
214077--214229	41	3.8	41	93	3	274	19	19	24	35	1.95
214076--214229	80	1.9	81	95	1	283	20	19	24	35	1.95
214248--214301	22	2.5	22	87	0	90	18	16	27	37	1.93
214518--214553	5	7.4	5	93	3	56	0	44	22	33	1.53
214661--214801	19	7.5	19	72	19	116	39	21	20	19	1.93
214751--214822	22	3.4	22	73	11	87	37	25	19	18	1.94
214733--214822	41	2.2	41	97	0	171	38	23	18	18	1.93
214811--214928	21	5.7	21	79	2	96	37	23	16	22	1.94
214835--214877	20	2.2	20	95	0	77	46	20	20	11	1.82
214840--214886	20	2.3	20	88	0	67	51	19	21	8	1.73
225925--225958	17	1.9	17	94	5	59	61	0	0	38	0.96
253720--253771	21	2.5	21	81	3	61	38	19	25	17	1.93
253757--253834	41	1.9	41	89	0	120	39	21	15	23	1.91
253760--253853	20	4.7	20	80	2	89	34	24	17	24	1.96
254371--254437	19	3.5	19	85	2	89	47	25	16	10	1.78
254433--254598	20	9.1	19	73	16	127	12	22	21	43	1.86
254438--254514	39	2.0	39	87	5	111	9	19	25	45	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
254486--254573	33	2.6	33	90	1	131	12	25	23	38	1.90
256657--256723	21	3.2	21	70	6	64	23	37	20	17	1.94
256601--256684	42	2.0	42	80	0	96	21	38	15	25	1.92
258081--258116	14	2.6	14	95	0	63	30	0	25	44	1.54
258240--258321	19	4.5	19	76	16	84	15	21	19	42	1.89
258224--258300	33	2.3	34	80	6	86	19	22	20	37	1.94
260594--260618	12	2.1	12	100	0	50	0	28	0	72	0.86
260793--260846	24	2.2	24	90	0	81	38	20	16	24	1.92
261906--261963	20	2.9	20	94	0	98	37	22	22	17	1.93
261982--262049	19	3.8	19	85	12	92	14	22	16	47	1.82
264123--264180	14	3.9	14	79	16	71	48	24	17	10	1.78
264107--264197	32	2.8	33	94	3	166	47	21	18	12	1.81
264049--264202	19	8.6	19	73	17	105	42	23	20	13	1.87
264214--264271	14	3.9	14	79	16	71	8	17	25	48	1.75
264209--264287	32	2.4	33	95	2	142	10	18	24	46	1.80
264209--264287	14	4.8	17	71	22	62	10	18	24	46	1.80
264272--264326	20	2.8	19	83	8	65	16	23	23	36	1.94
264798--264842	18	2.5	18	88	0	72	13	15	44	26	1.83
266162--266199	20	1.9	20	88	0	58	50	21	15	13	1.78
266463--266506	22	2.0	22	95	0	79	18	15	45	20	1.85
266694--266787	20	4.7	20	80	2	89	24	17	24	34	1.96
266674--266788	20	5.7	20	78	5	88	24	16	23	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
266777--266869	20	4.5	21	78	4	100	17	24	18	39	1.91
266716--266850	41	3.3	41	84	4	148	20	20	20	38	1.94
266777--266869	41	2.3	41	100	0	186	17	24	18	39	1.91
268832--268902	23	3.1	23	79	2	72	15	12	32	39	1.85
270419--270451	17	2.0	16	94	5	57	30	6	15	48	1.69
276673--276718	19	2.4	20	85	7	60	47	15	15	21	1.81
279878--279929	26	2.0	26	96	0	95	40	11	3	44	1.59
279884--279937	26	2.1	26	89	6	83	44	9	3	42	1.54
281970--282040	34	2.1	34	89	0	106	30	8	8	52	1.62
283102--283157	24	2.3	24	87	0	76	16	8	19	55	1.67
284618--284670	16	3.4	16	82	10	74	7	11	22	58	1.57
284737--284768	16	2.0	16	100	0	64	6	12	25	56	1.59
289966--289998	14	2.4	14	90	10	50	45	3	0	51	1.16
296945--296988	17	2.4	19	85	7	56	47	0	2	50	1.13
297001--297034	10	3.3	10	91	4	50	38	2	0	58	1.13
298592--298670	38	2.1	39	95	2	142	32	15	11	40	1.83
302504--303824	106	12.4	106	93	1	2183	33	24	18	23	1.97
304027--304355	85	3.9	85	88	2	410	29	24	20	25	1.99
304874--304933	2	30.5	2	83	9	79	48	0	1	50	1.11
304963--304995	3	11.3	3	93	6	59	36	0	0	63	0.95
304965--305004	20	2.0	20	90	0	62	37	2	0	60	1.11
306623--306683	17	3.4	17	68	24	52	29	19	11	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
306621--306699	38	2.1	39	97	2	151	31	15	12	40	1.84
310595--310619	13	1.9	13	100	0	50	40	8	8	44	1.63
311047--311112	16	4.1	17	74	14	59	51	24	1	22	1.57
312245--312326	23	3.7	22	85	4	94	20	25	30	23	1.99
313602--313652	19	2.7	19	100	0	102	29	21	25	23	1.99
314741--314813	30	2.4	30	95	0	128	24	17	24	32	1.97
318846--318885	21	1.9	21	85	10	55	35	10	2	52	1.48
320882--320924	21	2.1	20	86	4	59	11	23	39	25	1.88
323192--323243	26	2.0	26	100	0	104	19	15	15	50	1.79
324082--324107	4	6.5	4	100	0	52	76	0	0	23	0.78
328797--328839	20	2.2	20	83	8	52	76	13	2	6	1.08
329539--329611	29	2.5	29	95	0	128	30	15	26	28	1.96
330236--330262	4	6.8	4	100	0	54	77	0	0	22	0.76

Tables:   1   2

The End!