genome.fa.s8524.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008524.1 Hibiscus syriacus cultivar Beakdansim tig00111393_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  760704

Tables:   1   2   3   

This is table  1  of  3  ( 294 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
993--1059	21	3.2	21	68	4	55	19	19	35	25	1.95
993--1115	42	2.9	41	79	7	113	22	17	36	22	1.95
3170--3234	32	2.0	32	90	0	103	44	23	21	10	1.83
3189--3218	13	2.3	13	100	0	60	43	26	20	10	1.83
3097--3229	51	2.5	52	84	4	169	44	21	22	11	1.84
3090--3234	19	8.1	19	70	18	96	44	20	22	11	1.84
3230--3273	18	2.4	19	88	7	72	6	15	25	52	1.68
3823--3875	20	2.7	20	93	0	88	26	20	28	24	1.99
3884--3937	20	2.7	20	97	0	99	25	18	24	31	1.97
3824--3940	61	1.9	61	85	0	162	23	17	24	33	1.97
3819--3958	61	2.3	61	80	6	160	23	18	24	33	1.97
4008--4048	21	2.0	21	85	0	55	34	31	17	17	1.93
20048--20131	31	2.5	34	75	15	93	50	0	10	39	1.37
20072--20138	31	2.1	32	91	2	109	49	0	13	37	1.42
23828--23863	19	1.9	20	88	11	58	50	0	0	50	1.00
29094--29126	17	1.9	17	93	0	57	39	9	6	45	1.61
30907--30981	13	6.0	13	67	13	50	50	0	0	49	1.00
31647--32382	244	3.0	244	99	0	1463	25	23	20	30	1.99
35817--35863	25	2.0	25	84	16	64	48	6	4	40	1.48
36571--36621	25	2.0	25	84	0	66	31	37	1	29	1.69
37911--38265	178	2.0	179	89	2	545	38	13	11	36	1.82
45837--45896	3	20.0	3	96	0	111	31	0	1	66	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48035--48110	18	3.9	19	86	8	84	30	31	21	17	1.96
48057--48110	18	3.0	18	94	0	90	29	33	18	18	1.95
49495--49539	22	2.0	22	95	0	81	26	24	22	26	2.00
49500--49546	22	2.1	22	92	0	76	27	27	21	23	1.99
51284--51316	15	2.1	16	88	5	50	39	3	0	57	1.14
52521--52583	29	2.2	29	82	0	72	38	7	1	52	1.40
52710--52765	28	2.0	29	82	6	71	55	0	0	44	0.99
52814--52843	15	2.0	15	93	0	51	63	0	6	30	1.20
52903--52962	24	2.4	24	86	13	86	63	0	6	30	1.20
55429--55479	24	2.1	24	85	7	68	25	39	3	31	1.74
60566--60616	24	2.1	24	85	7	68	25	41	1	31	1.67
62037--62076	15	2.6	16	77	22	50	60	7	0	32	1.25
62952--62979	2	14.0	2	100	0	56	0	50	0	50	1.00
72407--72443	20	1.9	19	89	10	58	45	10	24	18	1.81
81391--81438	18	3.0	16	75	22	55	35	0	0	64	0.94
87235--87326	23	4.0	23	80	5	105	31	25	25	18	1.98
88864--88921	20	2.6	22	89	10	84	25	22	20	31	1.98
88909--89069	64	2.5	63	80	5	198	26	22	18	32	1.97
92398--92458	23	2.7	23	84	0	95	31	27	24	16	1.96
94021--94073	24	2.4	23	87	12	76	26	22	18	32	1.97
94061--94221	64	2.5	62	84	5	223	26	23	18	31	1.97
99250--99278	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113813--113936	21	6.3	20	70	10	62	23	20	20	35	1.96
114337--114427	19	4.4	20	71	17	78	30	25	5	38	1.78
131076--131119	17	2.4	19	85	7	56	61	6	0	31	1.22
131568--131724	82	1.9	82	97	0	296	38	19	0	41	1.52
131734--131839	51	2.1	51	100	0	212	41	5	30	22	1.77
133933--134009	15	5.1	16	68	16	56	53	0	0	46	1.00
133957--133997	19	2.2	19	87	12	59	56	0	0	43	0.99
133928--134013	29	2.9	29	77	10	102	53	0	0	46	1.00
135530--135602	15	4.9	15	83	3	103	41	6	20	31	1.79
135530--135602	30	2.5	30	97	2	139	41	6	20	31	1.79
135585--135634	20	2.5	20	96	0	91	42	10	14	34	1.78
135956--136004	20	2.4	21	81	15	59	51	0	0	48	1.00
135961--136061	30	3.4	30	80	14	104	51	0	0	47	1.07
135990--136032	20	2.1	21	86	4	61	53	0	0	46	1.00
135960--136118	27	6.0	25	71	18	85	51	1	0	46	1.13
136306--136424	42	2.8	42	97	0	220	45	16	19	18	1.86
136773--136803	6	5.2	6	100	0	62	16	0	0	83	0.64
138275--138402	28	4.5	28	97	2	229	37	28	11	22	1.89
148428--148513	41	2.1	42	88	2	129	33	20	16	29	1.95
149728--149761	11	2.9	12	91	8	61	35	20	17	26	1.95
155737--155796	30	2.0	30	100	0	120	43	23	10	23	1.83
161620--161672	25	2.2	23	86	6	70	58	1	7	32	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
162444--162480	20	2.0	20	89	10	60	40	0	0	59	0.97
163358--163387	3	10.0	3	100	0	60	33	0	0	66	0.92
164192--164230	18	2.2	18	86	9	53	48	0	0	51	1.00
164939--165140	101	2.0	100	94	0	350	33	14	27	24	1.95
172500--172540	2	20.5	2	100	0	82	51	0	0	48	1.00
175824--175875	20	2.7	20	84	3	61	44	0	3	51	1.19
176104--176171	24	2.8	23	78	10	55	35	4	0	60	1.17
176107--176245	59	2.3	60	77	11	144	32	6	2	58	1.35
176988--177035	26	1.9	24	91	8	78	56	2	6	35	1.36
177029--177058	14	2.2	13	94	5	51	76	0	0	23	0.78
178223--178266	23	2.0	22	90	4	70	27	4	0	68	1.09
178227--178274	15	3.1	16	77	22	57	29	6	0	64	1.18
183364--183407	9	4.9	9	79	20	56	77	0	9	13	0.99
193897--193964	27	2.5	27	83	7	75	33	4	7	54	1.48
194367--194432	21	3.2	21	83	10	82	59	1	0	39	1.07
195758--195803	18	2.5	19	78	3	58	50	19	2	28	1.60
219891--219936	24	1.9	24	82	8	58	50	2	8	39	1.46
220292--220329	18	2.1	18	85	9	51	52	2	5	39	1.38
221256--221320	20	3.4	19	68	12	53	40	1	1	56	1.18
231383--231457	31	2.5	31	91	2	116	26	13	34	25	1.93
238032--238088	30	2.0	29	90	10	91	31	10	28	29	1.90
239125--239203	6	13.5	6	79	19	78	15	12	35	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
242425--242466	19	2.2	19	86	0	57	57	0	19	23	1.41
245650--245730	6	13.5	6	98	0	144	16	13	34	35	1.88
247418--247503	37	2.3	37	76	11	86	41	2	12	43	1.56
248593--248624	2	16.5	2	93	6	57	53	0	0	46	1.00
249491--249520	2	15.0	2	100	0	60	50	0	0	50	1.00
251745--252059	149	2.1	149	95	1	569	26	17	20	34	1.95
252027--252071	23	2.0	23	86	0	63	20	26	26	26	1.99
258782--259096	149	2.1	149	94	2	553	27	17	20	34	1.95
259064--259108	23	2.0	23	86	0	63	20	26	26	26	1.99
259739--259811	31	2.3	32	83	6	96	28	21	12	36	1.90
260490--260524	7	4.9	7	89	6	52	42	17	0	40	1.49
261922--261955	18	1.9	17	88	5	50	64	5	0	29	1.17
275157--275302	79	1.8	79	89	0	229	34	10	19	35	1.85
277216--277263	6	8.0	6	95	0	87	18	0	81	0	0.70
283745--283812	33	2.1	33	97	0	127	27	10	16	45	1.79
285516--285561	14	3.3	14	90	0	65	26	36	28	8	1.86
285553--285627	33	2.3	33	88	4	107	28	25	38	8	1.84
285686--285710	12	2.1	12	100	0	50	16	36	8	40	1.77
285888--286012	56	2.2	56	87	6	175	50	4	6	39	1.47
294508--294548	20	2.0	20	90	0	64	43	0	19	36	1.51
314505--314532	10	2.8	10	100	0	56	82	7	10	0	0.85
318367--318397	2	16.0	2	93	6	55	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
322057--322126	20	3.5	20	72	25	58	35	2	4	57	1.33
322591--322629	20	1.9	21	94	5	71	46	25	15	12	1.81
322577--323903	183	7.4	181	81	6	1371	45	12	14	27	1.81
323429--323906	182	2.6	181	87	2	688	44	11	15	28	1.81
324322--324379	15	3.7	15	83	6	71	22	50	1	25	1.59
326948--326993	21	2.2	21	84	7	58	43	15	15	26	1.85
326964--327821	199	4.3	199	87	4	1151	42	15	14	28	1.85
326964--327821	399	2.2	399	89	2	1296	42	15	14	28	1.85
328445--328480	18	2.0	18	100	0	72	11	22	16	50	1.77
329934--329978	23	2.0	23	86	0	63	40	17	6	35	1.76

Tables:   1   2   3