genome.fa.s8524.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008524.1 Hibiscus syriacus cultivar Beakdansim tig00111393_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  760704

Tables:   1   2   3   

This is table  3  of  3  ( 294 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
590576--590669	47	2.0	47	83	4	118	39	4	9	46	1.56
593778--593867	44	2.0	44	100	0	180	15	7	24	52	1.69
614054--614099	21	2.2	21	100	0	92	28	13	41	17	1.86
619141--619235	27	3.6	27	94	2	158	42	16	11	29	1.84
622933--623000	27	2.6	27	95	4	122	41	16	11	30	1.84
623259--623363	49	2.1	49	98	1	201	26	14	20	39	1.90
630690--630735	15	3.1	15	78	12	51	30	10	2	56	1.46
633976--634067	45	2.0	45	97	0	175	28	14	33	23	1.94
640445--640512	20	3.4	20	78	8	75	32	7	13	47	1.70
645633--645666	16	2.1	16	88	0	50	50	0	2	47	1.16
646206--646463	128	2.0	126	90	1	408	36	12	14	36	1.84
646848--646923	35	2.2	35	92	0	125	35	1	23	39	1.63
652175--652220	23	2.0	23	82	0	56	30	6	2	60	1.34
655329--655667	179	1.9	180	83	3	441	38	22	16	23	1.93
666211--666818	159	3.8	158	79	5	618	38	12	24	25	1.90
672439--672469	13	2.4	13	100	0	62	19	16	48	16	1.81
679634--679664	13	2.4	13	94	0	53	22	16	45	16	1.85
679677--679722	20	2.3	20	85	3	67	32	26	21	19	1.97
691818--691863	24	2.0	23	83	12	58	32	2	6	58	1.36
698525--698568	22	2.1	22	87	8	65	47	0	18	34	1.49
703710--703925	108	2.0	108	99	0	423	37	10	18	33	1.84
707072--707129	31	1.9	30	86	10	82	51	6	8	32	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
713791--713895	49	2.1	50	79	10	119	45	1	1	50	1.23
714135--714183	14	3.4	14	75	8	53	57	0	0	42	0.99
714107--714183	29	2.5	32	83	14	99	50	0	1	48	1.09
714107--714183	30	2.5	30	79	14	77	50	0	1	48	1.09
714379--714491	42	2.8	40	86	6	156	46	17	15	20	1.83
721461--721565	24	4.4	24	77	7	106	48	16	14	20	1.80
721473--721532	12	5.0	12	72	8	59	48	18	15	18	1.81
721461--721565	48	2.2	47	83	6	122	48	16	14	20	1.80
726109--726204	24	4.0	24	90	0	138	50	17	12	19	1.78
726111--726204	12	7.8	12	70	9	66	50	18	12	19	1.78
726116--726241	48	2.6	48	81	5	139	49	16	12	21	1.79
728624--728692	10	6.5	10	74	15	50	24	28	24	21	1.99
728970--729055	27	3.6	23	75	18	86	30	16	16	37	1.91
729010--729052	22	1.9	22	90	4	68	32	18	18	30	1.95
729016--729091	21	3.8	21	75	19	72	35	13	14	36	1.85
729015--729109	39	2.4	39	87	6	147	34	12	13	38	1.83
729037--729112	18	4.1	17	75	17	62	35	10	11	42	1.76
731984--732050	31	2.2	31	83	5	82	26	26	10	35	1.89
734315--734382	31	2.2	31	100	0	136	30	16	32	20	1.94
734315--734392	31	2.5	31	93	0	120	30	15	32	21	1.94
735882--735923	3	14.0	3	100	0	84	66	0	0	33	0.92
736308--736342	17	2.1	17	89	10	54	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
744019--744173	64	2.4	64	79	10	174	35	19	18	26	1.95
745168--745208	21	2.0	21	85	0	55	29	29	24	17	1.97
745234--745278	22	2.0	22	82	4	54	31	31	26	11	1.91
748995--749035	21	2.0	21	85	0	55	29	29	24	17	1.97
749859--749968	29	3.8	29	91	2	177	46	15	20	18	1.84
750170--750203	16	2.1	16	89	10	52	26	38	2	32	1.71
750343--750392	22	2.3	22	96	0	91	34	10	14	42	1.78
754523--754626	51	2.0	51	92	0	172	31	12	23	32	1.92
755753--755827	23	3.3	23	80	0	96	26	22	30	20	1.98
757422--757458	19	1.9	19	94	0	65	27	27	13	32	1.94

Tables:   1   2   3

The End!