Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008540.1 Hibiscus syriacus cultivar Beakdansim tig00111429_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  255285

Tables:   1   2   

This is table  2  of  2  ( 148 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
235512--235766
14
19.7
13
72
21
94
53
3
2
40
1.32
236702--236774
23
3.3
22
69
11
69
46
12
24
16
1.81
236692--236794
43
2.4
43
93
0
170
47
15
21
15
1.82
236725--236791
20
3.2
20
70
12
62
50
13
20
14
1.77
243394--243451
3
18.3
3
86
13
73
32
0
0
67
0.91
243397--243459
9
7.8
8
80
19
53
31
0
1
66
1.01
245029--245072
22
2.0
22
81
0
52
27
4
15
52
1.63
246458--246529
33
2.2
33
100
0
144
26
9
27
36
1.88
250239--250286
4
13.0
4
83
16
68
50
27
0
22
1.50
250235--250286
18
2.9
18
100
0
104
50
26
0
23
1.50
250243--250285
14
3.1
14
93
0
68
51
27
0
20
1.48
250775--250872
36
2.8
36
82
3
128
34
18
12
34
1.88
251124--251355
29
8.0
29
74
13
174
27
10
15
47
1.77
251120--251366
57
4.3
54
71
19
128
27
10
15
47
1.77
251094--251426
147
2.3
145
95
2
600
26
11
15
46
1.80
251271--251366
29
3.6
25
81
12
86
28
8
15
47
1.74
251467--251535
28
2.5
28
90
4
104
34
7
14
43
1.73
251513--251639
37
3.6
37
69
16
117
31
11
11
44
1.77
251480--251704
67
3.4
65
86
5
285
30
11
12
45
1.78
251429--251602
95
1.8
93
85
4
242
32
10
14
42
1.79
251751--251974
120
1.9
119
79
8
258
30
14
12
42
1.83
251872--251996
64
2.0
63
87
1
178
30
14
12
43
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
251978--252057
40
2.0
40
87
4
117
31
20
11
37
1.87
252100--252160
31
2.0
30
81
12
70
32
14
9
42
1.79
252434--252529
36
2.7
34
79
10
95
30
16
12
40
1.86
252455--252529
35
2.1
36
85
7
100
36
18
10
34
1.86
252899--253211
133
2.3
134
90
1
495
25
30
17
25
1.97
253404--253457
3
17.3
3
92
7
90
33
0
0
66
0.92

Tables:   1   2

The End!