genome.fa.s8549.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008549.1 Hibiscus syriacus cultivar Beakdansim tig00111441_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  316982

Tables:   1   2   

This is table  1  of  2  ( 198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--161	33	4.7	33	74	17	150	44	18	22	14	1.86
1--167	19	9.6	19	75	19	168	43	17	22	15	1.87
1--167	52	3.2	52	94	1	291	43	17	22	15	1.87
157--273	53	2.2	53	95	1	209	14	24	17	43	1.86
174--273	19	5.5	19	84	12	147	15	23	17	45	1.85
373--412	14	2.8	14	88	3	62	42	22	0	35	1.54
2319--2438	19	6.6	18	76	12	95	45	24	19	11	1.83
2434--2545	19	6.5	18	72	20	105	6	18	27	47	1.73
2434--2526	33	2.8	32	90	4	141	6	19	27	46	1.74
2606--3076	93	5.1	93	97	1	869	45	18	12	22	1.83
2606--3076	185	2.5	186	96	2	869	45	18	12	22	1.83
4768--4864	14	5.7	18	73	21	93	42	22	24	10	1.85
4756--4843	14	5.7	14	72	25	63	42	23	25	9	1.83
4748--4859	33	3.5	33	91	3	185	44	21	24	9	1.82
4876--4932	14	3.7	14	75	20	60	8	24	22	43	1.81
4860--4940	33	2.5	33	95	0	144	8	22	22	46	1.78
4917--4992	21	3.7	21	83	3	109	11	25	17	46	1.82
4916--4993	41	1.9	41	97	0	147	12	25	16	44	1.83
5072--5139	30	2.2	32	86	7	95	48	16	22	13	1.80
5320--5373	21	2.5	22	78	3	65	20	16	38	24	1.92
5519--5692	20	8.6	20	83	5	217	19	19	26	34	1.96
5521--5692	60	2.8	60	84	0	245	19	19	26	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9795--9841	2	24.0	2	86	4	69	53	2	0	44	1.12
12198--12442	105	2.3	108	80	6	282	25	21	15	37	1.93
13691--13778	8	11.1	8	73	21	62	10	11	0	78	0.97
13683--13794	27	4.2	27	80	10	108	8	14	0	76	1.05
13682--13746	26	2.5	26	83	16	82	9	15	0	75	1.04
13691--13778	36	2.5	34	84	15	117	10	11	0	78	0.97
25314--25363	2	25.0	2	84	8	66	52	2	2	44	1.24
30223--30427	59	3.5	60	82	5	231	42	4	21	31	1.72
34418--34476	3	19.0	3	79	6	64	32	0	0	67	0.91
34430--34476	19	2.5	19	89	0	76	36	0	0	63	0.94
38849--38949	42	2.4	41	83	3	139	30	22	22	23	1.99
38176--39280	215	5.1	215	94	0	1849	32	20	15	32	1.93
39063--39163	42	2.4	41	83	3	139	30	22	22	23	1.99
41199--41422	123	1.8	125	85	3	319	26	23	16	33	1.95
43054--43098	22	2.0	22	82	4	54	33	2	11	53	1.49
43960--43993	11	3.4	10	92	8	52	67	17	14	0	1.23
43959--43986	11	2.5	11	100	0	56	71	14	14	0	1.15
44216--44247	13	2.4	13	94	5	55	31	9	18	40	1.83
50577--50715	51	2.6	53	85	7	192	20	24	13	41	1.89
51088--51117	15	2.0	15	100	0	60	13	46	6	33	1.69
56092--56152	12	4.7	13	73	13	54	37	0	0	62	0.96
56710--56750	21	2.0	21	90	9	66	48	2	0	48	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56746--56795	20	2.4	21	83	9	59	28	2	2	68	1.12
58366--58394	12	2.3	13	94	5	51	27	13	6	51	1.66
65056--65130	22	3.5	22	89	7	127	33	12	13	41	1.81
65806--66457	76	8.6	76	95	0	1137	23	18	22	35	1.96
66391--66584	45	4.3	46	94	1	313	25	20	18	36	1.95
66391--66584	91	2.1	91	91	2	311	25	20	18	36	1.95
66699--66749	3	17.0	3	87	0	75	31	0	0	68	0.90
67982--68006	12	2.1	12	100	0	50	44	16	16	24	1.86
69790--69831	10	4.2	10	78	9	50	33	0	2	64	1.07
69787--69830	19	2.4	18	85	11	54	29	0	2	68	1.02
70729--70754	4	6.5	4	100	0	52	23	0	0	76	0.78
71437--71476	20	2.0	20	95	0	71	45	12	5	37	1.64
71490--71529	20	2.0	21	90	5	64	45	15	5	35	1.68
71543--71581	20	2.0	20	94	0	69	41	17	5	35	1.72
71433--71582	53	2.9	52	96	3	275	48	13	6	32	1.67
76153--76192	20	2.0	20	95	0	71	45	12	5	37	1.64
76206--76245	20	2.0	21	90	5	64	45	15	5	35	1.68
76259--76297	20	2.0	20	94	0	69	41	17	5	35	1.72
76149--76298	52	2.9	52	94	3	266	48	13	5	32	1.65
76995--77088	45	2.1	45	100	0	188	34	12	23	29	1.92
80184--80216	10	3.4	10	87	4	50	18	6	15	60	1.54
84279--84328	22	2.4	19	81	15	55	26	4	16	54	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84529--84595	28	2.4	28	94	0	116	44	29	11	13	1.79
95663--95698	2	18.0	2	100	0	72	50	0	0	50	1.00
97771--97872	43	2.3	44	86	8	145	30	22	24	22	1.99
97793--97873	24	3.5	24	73	20	84	30	23	23	22	1.99
101654--101693	21	1.9	21	85	10	55	35	10	2	52	1.48
107286--107326	16	2.6	16	92	3	66	36	21	4	36	1.75
107735--107872	60	2.3	60	81	5	154	38	9	12	39	1.75
116163--116206	23	1.9	23	85	0	61	63	4	2	29	1.26
117561--117695	20	6.7	20	84	5	191	32	28	19	20	1.96
117541--117695	60	2.6	61	85	4	206	34	27	18	18	1.95
118073--118143	33	2.2	33	94	0	124	11	23	16	47	1.79
118223--118299	21	3.7	21	81	6	102	48	16	22	12	1.80
118298--118341	18	2.4	19	92	3	72	47	27	18	6	1.73
118337--118464	19	7.1	19	70	19	78	11	25	17	45	1.82
118359--118415	14	3.7	14	72	20	51	10	24	21	43	1.83
118342--118464	33	3.5	33	85	10	156	11	24	17	46	1.81
118400--118464	21	3.1	21	80	4	87	12	26	13	47	1.78
119632--119730	50	2.0	49	98	2	189	22	18	28	31	1.97
120183--120403	92	2.4	93	97	1	419	22	14	19	44	1.85
120563--120621	19	3.4	19	77	22	83	47	30	15	6	1.71
120579--120605	14	1.9	14	100	0	54	48	29	14	7	1.71
120497--120621	34	3.7	33	87	3	169	47	27	16	8	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120617--120789	19	9.6	19	76	12	159	10	20	23	45	1.81
120639--120695	14	3.7	14	75	20	51	10	22	22	43	1.84
120617--120789	33	4.8	38	80	8	168	10	20	23	45	1.81
121184--121269	44	2.0	44	85	0	118	20	40	16	22	1.91
122753--122788	14	2.6	14	95	0	63	33	0	22	44	1.53
122895--122973	19	4.4	19	80	16	105	45	17	22	13	1.84
122988--123257	53	5.1	53	89	8	403	14	22	17	45	1.84
122988--123257	105	2.6	109	90	8	418	14	22	17	45	1.84
123010--123243	72	3.3	72	79	11	272	14	22	17	46	1.84
125733--125779	24	2.0	24	87	8	69	38	21	14	25	1.92
126471--126540	20	3.5	20	90	0	113	18	15	22	42	1.88
126504--126569	31	2.1	32	85	2	89	18	16	25	39	1.91
126471--126611	71	2.0	70	83	5	176	19	17	26	37	1.93
126541--126690	20	7.5	20	78	5	124	16	18	27	38	1.91
126484--126587	51	2.0	52	81	5	122	19	18	25	36	1.94
126541--126690	40	3.8	40	87	1	158	16	18	27	38	1.91
128032--128072	22	1.9	21	85	14	57	24	2	0	73	0.96
137953--139068	84	13.5	83	77	7	875	31	24	19	25	1.98
137994--139058	249	4.3	245	81	5	1051	30	24	19	25	1.98
137953--139058	409	2.7	410	85	3	1420	31	23	19	25	1.98
140437--140482	3	16.0	3	78	17	53	30	2	0	67	1.03
140444--140485	22	1.9	22	90	9	68	26	2	0	71	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
146465--146503	16	2.4	16	91	0	69	58	23	10	7	1.56
147591--147638	10	4.4	10	78	19	51	54	25	12	8	1.65
147598--147639	14	3.3	14	75	25	56	52	26	14	7	1.67
147591--147639	24	2.0	24	100	0	98	53	24	14	8	1.68
154484--154554	32	2.2	32	85	5	90	28	28	23	19	1.99
161820--161867	24	2.0	24	91	0	78	41	12	12	33	1.80
164302--164874	81	7.1	81	91	0	817	32	23	9	35	1.87
164302--164874	242	2.4	243	89	0	853	32	23	9	35	1.87
164892--164957	33	2.0	33	93	0	114	39	18	0	42	1.50
169463--169518	21	2.7	21	91	0	85	46	0	8	44	1.34

Tables:   1   2