genome.fa.s8549.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008549.1 Hibiscus syriacus cultivar Beakdansim tig00111441_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  316982

Tables:   1   2   

This is table  2  of  2  ( 198 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
176385--176534	60	2.5	60	78	4	149	44	6	20	29	1.75
180553--180610	22	2.6	22	83	5	73	32	25	20	20	1.97
180742--180788	23	2.1	22	92	4	76	44	36	0	19	1.51
184135--184178	21	2.0	22	86	4	63	54	6	2	36	1.40
198541--198694	20	7.7	20	89	2	247	31	27	19	21	1.97
198503--198690	40	4.7	40	85	3	211	35	25	18	20	1.96
198503--198694	60	3.2	59	81	7	219	34	26	19	20	1.96
199074--199144	33	2.2	33	92	0	115	11	22	16	49	1.78
199224--199297	21	3.5	21	78	7	87	47	17	18	16	1.83
199285--199341	14	3.7	14	75	20	60	43	22	24	8	1.81
199278--199355	33	2.4	33	95	0	138	47	21	21	8	1.78
199375--199431	14	3.7	14	75	20	60	8	24	22	43	1.81
199358--199481	33	3.5	33	86	10	158	12	24	17	45	1.82
199416--199480	21	3.1	21	82	4	96	10	26	15	47	1.78
201163--201476	93	3.4	93	96	1	587	21	13	18	45	1.84
201574--201727	19	8.6	19	75	14	139	45	22	20	11	1.82
201649--201705	14	3.7	14	75	20	51	43	22	22	10	1.84
201592--201722	33	3.8	33	89	5	181	46	22	21	9	1.80
201591--201727	52	2.6	51	74	7	141	45	21	21	10	1.81
201739--201797	14	3.9	14	76	20	64	6	16	28	47	1.72
201723--201846	33	3.7	33	91	1	185	8	17	27	45	1.78
201723--201814	19	5.4	18	72	24	83	7	17	28	46	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
201772--201828	14	3.7	14	72	20	51	8	22	24	43	1.81
202300--202366	21	3.2	21	68	6	64	26	35	17	19	1.94
203769--203804	14	2.6	14	95	0	63	33	0	22	44	1.53
203895--203982	19	4.8	19	82	14	123	47	15	22	13	1.81
203895--204001	53	2.0	52	98	1	205	45	16	24	13	1.83
203991--204174	33	5.4	33	73	16	160	14	23	17	43	1.87
204001--204227	105	2.2	106	95	0	411	14	22	17	45	1.84
204001--204227	53	4.3	53	96	1	411	14	22	17	45	1.84
204062--204241	33	5.2	33	74	13	166	13	22	18	46	1.83
204001--204260	53	4.9	53	89	4	259	13	22	18	45	1.85
206522--206546	12	2.1	12	100	0	50	0	28	0	72	0.86
206721--206767	24	2.0	24	87	8	69	38	21	14	25	1.92
207460--207689	20	11.5	20	87	4	243	19	17	26	37	1.93
207697--207773	21	3.7	20	76	11	75	24	19	22	33	1.97
207676--207775	42	2.4	44	77	12	104	22	19	22	37	1.95
209041--209094	24	2.2	24	77	6	56	9	14	27	48	1.75
209051--209083	14	2.4	14	94	0	57	6	12	27	54	1.60
209076--209116	14	2.9	14	85	0	55	14	12	17	56	1.68
209052--209103	24	2.2	24	89	0	77	9	11	25	53	1.67
209842--209916	10	7.7	10	69	21	61	9	12	21	57	1.62
209848--209912	16	4.1	16	95	0	121	7	12	23	56	1.61
212181--212210	13	2.3	13	100	0	60	33	6	10	50	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
228874--228953	38	2.1	39	84	9	103	50	2	1	46	1.23
230825--230884	29	2.0	30	93	3	104	35	3	20	41	1.68
234639--234667	3	9.7	3	100	0	58	34	0	65	0	0.93
236709--236761	28	1.9	27	84	3	70	43	7	3	45	1.50
236737--236768	11	2.9	11	90	0	55	43	0	3	53	1.16
239120--239328	24	8.7	24	81	8	165	26	15	33	24	1.95
239106--239244	72	1.9	72	82	2	172	26	14	31	27	1.95
241628--241682	28	2.0	28	100	0	110	45	7	21	25	1.77
245255--245418	60	2.7	60	78	7	156	40	6	21	31	1.79
254683--254749	34	1.9	35	90	3	109	32	5	20	40	1.77
259938--259963	3	8.7	3	100	0	52	34	0	65	0	0.93
259941--260044	36	2.9	36	86	4	147	42	0	51	5	1.25
265658--265932	144	1.9	143	94	5	484	38	10	17	33	1.84
270718--270753	17	2.1	18	94	5	65	50	11	11	27	1.72
271429--271455	13	2.1	13	100	0	54	37	18	7	37	1.79
275838--275912	22	3.3	22	81	10	89	49	13	13	24	1.77
275838--275925	44	2.0	46	81	4	108	48	13	13	23	1.78
276430--276470	21	2.0	22	85	9	59	24	19	4	51	1.66
277904--277945	21	2.0	21	95	0	75	26	28	21	23	1.99
278049--278115	19	3.5	19	91	0	89	35	13	10	40	1.79
278178--278267	31	3.0	31	95	4	159	42	17	6	33	1.76
281078--281561	131	3.7	134	81	5	554	26	17	29	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
281523--281607	41	2.1	41	97	0	161	28	17	20	34	1.95
281957--282042	36	2.3	37	80	9	95	39	9	15	36	1.79
282363--282393	16	1.9	16	93	0	53	29	0	19	51	1.47
283061--284919	744	2.5	745	95	0	3348	31	17	16	34	1.92
285363--285409	21	2.2	21	92	0	85	21	25	27	25	1.99
292408--292508	50	2.0	50	90	0	157	31	22	14	30	1.94
307747--307822	30	2.6	29	80	13	77	32	11	5	50	1.62
311424--311453	2	15.0	2	100	0	60	50	0	0	50	1.00
314253--314295	22	2.0	22	85	0	59	72	9	4	13	1.26
314735--314784	23	2.2	22	83	16	59	70	0	8	22	1.13
315255--315326	35	2.1	35	97	0	135	27	22	11	38	1.88
315774--316220	109	4.1	110	92	1	749	21	18	26	32	1.97

Tables:   1   2

The End!