genome.fa.s8552.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008552.1 Hibiscus syriacus cultivar Beakdansim tig00111447_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  537591

Tables:   1   2   

This is table  2  of  2  ( 191 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
385591--385695	36	2.9	36	92	1	176	30	35	4	29	1.78
392797--392826	14	2.1	15	93	6	53	0	16	0	83	0.65
397343--397379	19	1.9	19	89	10	58	83	0	16	0	0.64
398273--398309	15	2.4	16	90	4	58	72	2	8	16	1.19
398273--398314	15	2.7	15	88	7	57	71	2	9	16	1.23
402447--402517	1	71.0	1	75	0	52	1	2	9	85	0.75
402436--402493	9	5.6	11	80	12	54	0	6	12	81	0.88
402447--402517	9	7.3	9	83	14	81	1	2	9	85	0.75
402436--402499	21	3.2	20	83	14	80	0	6	10	82	0.82
402469--402518	25	2.0	25	88	7	75	2	0	12	86	0.67
402447--402517	20	3.6	19	87	12	92	1	2	9	85	0.75
402447--402517	29	2.4	29	86	9	92	1	2	9	85	0.75
402871--402907	15	2.4	16	90	4	58	72	2	8	16	1.19
402871--402912	15	2.7	15	88	7	57	71	2	9	16	1.23
404827--404890	2	32.0	2	100	0	128	50	0	0	50	1.00
405750--405831	11	6.8	12	71	23	50	28	3	37	30	1.74
405728--405832	36	2.9	36	94	1	176	27	4	36	31	1.78
424585--424623	17	2.3	17	82	8	53	2	15	0	82	0.79
425003--425107	36	2.9	36	91	1	167	26	4	37	31	1.77
427460--427526	26	2.6	26	100	0	134	25	19	37	17	1.94
430888--430941	23	2.3	24	80	3	65	11	14	12	61	1.58
430996--431022	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
435369--435454	13	7.2	12	72	22	58	29	3	37	30	1.74
435351--435455	36	2.9	36	95	1	185	28	4	36	30	1.78
441054--441158	36	2.9	36	90	1	158	29	5	34	30	1.81
443794--443820	10	2.7	10	100	0	54	77	7	14	0	0.97
443782--443823	23	1.9	21	90	9	66	80	9	9	0	0.89
443783--443842	22	2.7	22	79	5	59	80	8	10	1	0.99
443784--443849	32	2.1	30	86	5	87	77	10	10	1	1.07
453397--453463	32	2.1	33	81	13	77	59	0	25	14	1.36
453487--453538	22	2.4	22	96	0	95	34	15	17	32	1.91
459862--459965	36	2.9	35	92	2	172	28	4	36	29	1.78
466649--466708	13	4.8	13	73	19	56	28	3	36	31	1.74
466630--466734	36	2.9	36	90	1	167	28	4	36	30	1.78
469029--469065	15	2.4	16	90	4	58	13	10	5	70	1.32
469416--469475	12	4.9	12	77	2	66	83	10	6	0	0.81
469430--469470	15	2.7	15	80	3	55	82	7	9	0	0.83
469416--469484	13	5.5	13	74	19	58	81	11	7	0	0.88
469434--469491	23	2.6	23	80	2	73	77	12	10	0	0.99
476507--476591	11	7.2	11	72	22	66	31	36	3	28	1.74
476505--476608	36	2.9	36	95	1	183	30	36	3	28	1.75
476625--476669	18	2.5	18	96	0	81	20	22	4	53	1.63
477015--477052	19	2.0	19	85	10	51	81	5	13	0	0.85
489489--489573	11	7.2	11	72	22	66	31	36	3	28	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
489487--489590	36	2.9	36	95	1	183	30	36	3	28	1.75
489609--489651	18	2.4	18	100	0	86	20	25	4	48	1.69
493960--494009	19	2.6	19	90	0	73	32	16	6	46	1.71
494351--494435	11	7.2	11	72	22	66	31	36	3	28	1.74
494348--494452	36	2.9	36	95	1	185	30	36	4	28	1.78
495069--495120	15	3.4	15	78	21	63	13	15	0	71	1.15
495878--495920	20	2.2	20	91	4	70	44	4	13	37	1.65
499962--500012	19	2.6	20	90	3	77	43	5	15	35	1.71
504273--504446	23	7.3	23	70	25	98	31	36	3	28	1.74
504273--504429	11	13.2	11	72	23	115	31	36	3	28	1.73
504270--504446	36	4.9	36	95	0	311	31	36	3	28	1.76
508681--508784	33	3.1	33	82	9	95	30	36	1	30	1.69
509171--509218	17	2.7	18	79	17	55	77	4	18	0	0.93
509169--509218	11	4.5	11	80	14	50	78	4	18	0	0.91
512706--512809	33	3.1	33	82	9	95	30	36	1	30	1.69
521776--521834	25	2.3	26	88	2	84	15	5	8	71	1.28
521776--521834	26	2.3	26	88	5	84	15	5	8	71	1.28
522554--522703	69	2.2	69	100	0	300	16	20	26	37	1.93
527257--527341	11	7.2	11	72	22	66	31	36	3	28	1.74
527254--527358	36	2.9	36	95	1	185	30	36	4	28	1.78
527970--528022	16	3.2	16	75	19	56	15	15	0	69	1.19
528786--528836	19	2.6	20	90	3	77	43	5	15	35	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
532871--532921	19	2.6	20	90	3	77	43	5	15	35	1.71
537179--537352	23	7.3	23	70	25	98	31	36	3	28	1.74
537179--537335	11	13.2	11	72	23	115	31	36	3	28	1.73
537176--537352	36	4.9	36	95	0	311	31	36	3	28	1.76
537531--537562	15	2.1	16	94	5	57	34	12	0	53	1.39

Tables:   1   2

The End!