genome.fa.s8566.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008566.1 Hibiscus syriacus cultivar Beakdansim tig00111481_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  191434

Tables:   1   2   

This is table  2  of  2  ( 148 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131996--132026	14	2.2	14	94	0	53	35	0	0	64	0.94
136721--136808	32	2.9	30	79	12	90	32	3	9	54	1.49
137679--137712	6	5.8	6	93	6	61	50	0	0	50	1.00
139075--139106	3	10.7	3	93	0	55	34	3	0	62	1.11
139345--139463	44	2.7	44	85	0	175	27	14	25	32	1.94
139608--139654	22	2.2	21	85	7	60	23	29	4	42	1.73
145040--145097	6	9.8	6	88	3	91	50	0	3	46	1.18
145570--145599	2	15.0	2	100	0	60	50	0	0	50	1.00
145396--145581	92	2.0	92	85	2	250	35	18	18	27	1.94
146617--146695	34	2.4	33	83	8	90	39	0	1	59	1.06
146607--146695	34	2.7	31	79	6	88	39	0	2	58	1.11
146837--146890	17	3.2	17	72	0	54	31	0	3	64	1.11
148424--148471	21	2.3	21	85	0	60	25	39	12	22	1.89
148476--148568	21	4.4	21	90	5	143	19	32	29	19	1.96
149088--149186	34	2.9	34	89	0	153	54	4	4	37	1.38
149878--150506	128	4.9	128	95	0	1116	32	20	24	22	1.98
150577--150617	8	5.2	8	77	16	50	39	26	0	34	1.57
154589--154633	3	15.0	3	95	0	81	64	0	0	35	0.94
155027--155065	20	2.0	20	85	5	53	41	0	2	56	1.13
158063--158101	17	2.2	18	90	4	62	41	10	20	28	1.85
158492--158997	254	2.0	258	90	5	799	40	20	12	26	1.88
161383--161479	32	3.0	32	100	0	194	37	9	12	41	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
169477--169565	23	3.9	23	86	0	124	30	24	19	25	1.98
173415--173460	23	2.0	23	87	8	67	19	23	26	30	1.98
179503--179545	21	2.0	21	81	0	50	27	27	25	18	1.98
180181--180225	22	2.0	23	86	4	65	20	24	24	31	1.98
182648--182686	14	2.8	14	100	0	78	41	20	15	23	1.90
186972--187010	19	2.1	19	90	0	69	51	15	23	10	1.73

Tables:   1   2

The End!