genome.fa.s8566.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008566.1 Hibiscus syriacus cultivar Beakdansim tig00111481_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  191434

Tables:   1   2   

This is table  1  of  2  ( 148 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8198--8506	111	2.9	105	81	11	323	31	22	15	30	1.95
8198--8506	55	5.9	50	82	8	248	31	22	15	30	1.95
8510--8581	37	2.0	36	94	2	126	20	22	20	36	1.96
9951--10023	38	2.0	35	82	12	85	12	13	0	73	1.09
19658--19762	45	2.3	46	91	6	169	40	19	8	32	1.82
24537--24617	40	2.0	40	100	0	162	24	19	19	35	1.95
26585--26706	36	3.7	30	76	19	102	53	0	0	45	1.12
26631--26712	35	2.6	32	77	19	82	53	1	0	45	1.08
26601--26699	35	2.9	34	81	11	103	53	0	1	45	1.07
26659--26714	29	1.9	28	86	13	78	55	1	0	42	1.10
26709--26742	14	2.3	15	90	5	52	52	2	2	41	1.31
26839--26892	27	2.0	27	82	7	65	57	0	0	42	0.98
28895--29283	187	2.1	182	91	2	618	42	3	8	45	1.51
29925--30001	31	2.5	31	80	2	91	27	31	27	14	1.95
29878--30001	63	2.0	63	82	6	153	25	29	28	16	1.97
30869--30913	7	6.4	7	100	0	90	26	28	28	15	1.96
30903--30967	22	3.0	22	97	0	121	10	23	47	18	1.79
30910--30950	5	7.8	5	84	10	55	4	21	53	19	1.63
30964--31061	19	5.2	18	81	15	117	27	30	28	13	1.94
30964--31081	38	3.1	38	83	11	127	28	28	27	14	1.95
30964--31081	29	4.1	28	81	12	116	28	28	27	14	1.95
30964--31081	9	12.3	9	80	10	110	28	28	27	14	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37322--37398	31	2.5	31	80	2	91	27	31	27	14	1.95
37275--37398	63	2.0	63	82	6	153	25	29	28	16	1.97
38267--38304	7	5.4	7	93	0	67	26	26	28	18	1.98
38294--38336	22	2.0	22	100	0	86	9	23	48	18	1.76
38306--38354	17	2.9	17	96	0	89	12	22	46	18	1.82
38294--38353	17	3.0	22	74	23	76	11	23	46	18	1.81
38350--38447	19	5.2	18	81	15	117	27	30	28	13	1.94
38350--38467	38	3.1	38	83	11	127	28	28	27	14	1.95
38350--38467	29	4.1	28	81	12	116	28	28	27	14	1.95
38350--38467	9	12.3	9	80	10	110	28	28	27	14	1.95
39695--39776	44	1.9	41	82	7	101	34	6	26	32	1.81
39697--39786	19	4.3	20	74	16	76	37	5	26	30	1.79
40085--40118	5	6.6	5	89	3	50	0	20	52	26	1.46
40208--40259	18	2.9	18	100	0	104	25	5	17	51	1.67
40244--40311	21	3.3	21	72	12	77	17	16	26	39	1.90
40258--40330	20	3.6	20	75	10	67	21	19	27	31	1.97
40248--40328	41	2.0	41	95	0	144	20	17	24	37	1.94
40726--40817	32	2.9	32	96	0	166	21	36	20	20	1.95
41104--41202	41	2.4	41	98	0	189	23	26	20	30	1.98
44841--44910	20	3.5	20	92	0	113	41	20	17	21	1.90
44839--44939	40	2.5	41	79	11	109	41	20	15	21	1.90
44918--44959	21	2.0	20	86	4	57	38	23	11	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48715--48757	13	3.3	13	86	0	68	16	18	46	18	1.84
49586--49626	20	2.0	20	95	0	73	41	19	14	24	1.89
49623--49661	20	2.0	20	94	0	69	30	12	15	41	1.85
49687--49724	20	1.9	20	94	0	67	34	21	15	28	1.94
49546--49738	97	2.0	97	92	0	323	34	18	15	31	1.92
49805--49854	20	2.4	22	69	24	54	26	14	22	38	1.91
49859--49905	19	2.4	20	89	3	69	23	17	34	25	1.96
62928--62973	24	1.9	24	82	8	58	67	4	13	15	1.38
66302--66622	103	3.1	103	95	0	570	36	23	13	27	1.92
68184--68228	21	2.1	21	83	0	54	13	24	31	31	1.93
71356--71403	23	2.1	23	84	0	60	27	22	25	25	2.00
71512--71551	21	1.9	21	85	10	55	40	22	10	27	1.86
71423--71743	103	3.1	103	94	0	561	36	23	13	27	1.91
73324--73368	21	2.1	21	83	0	54	13	24	31	31	1.93
75051--75075	11	2.3	11	100	0	50	40	16	16	28	1.89
75475--75551	23	3.3	23	90	0	109	32	18	19	29	1.95
75586--75644	29	2.3	25	76	23	68	45	8	3	42	1.51
75593--75653	29	2.1	29	100	0	122	47	11	3	37	1.56
78237--78273	14	2.7	14	84	15	51	70	0	16	13	1.17
79187--79223	14	2.7	14	84	15	51	70	0	16	13	1.17
77172--80014	951	3.0	946	97	0	5386	32	15	21	30	1.95
80169--80300	63	2.1	61	81	8	149	43	5	5	45	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80336--80567	36	6.2	37	75	10	190	46	6	2	45	1.41
80336--80569	72	3.1	71	78	9	236	46	5	2	45	1.41
80550--80578	2	14.5	2	100	0	58	51	0	0	48	1.00
81191--81279	45	1.9	48	84	11	123	35	5	12	46	1.65
83191--83282	46	2.0	46	97	0	175	48	13	8	29	1.71
84206--84256	25	2.0	25	96	0	93	54	0	17	27	1.43
84228--84813	87	6.8	85	79	6	452	47	6	19	26	1.73
84228--84829	43	14.0	43	79	6	560	47	6	19	26	1.74
84228--84828	128	4.7	128	79	6	549	47	6	19	26	1.74
84321--84828	170	3.0	171	80	4	551	47	6	19	26	1.74
84634--84894	84	3.1	84	79	8	224	54	6	15	23	1.65
84333--84892	170	3.3	170	78	5	389	49	6	18	25	1.71
85712--85749	15	2.4	16	82	8	51	42	0	0	57	0.98
85722--85771	23	2.2	23	92	3	84	38	0	0	62	0.96
97825--97871	2	24.0	2	78	4	51	55	4	0	40	1.19
105850--105920	11	6.8	11	75	14	62	84	1	12	1	0.76
105855--105910	9	5.9	9	77	10	58	85	0	12	1	0.67
105854--105911	10	5.9	10	78	11	66	86	0	12	1	0.65
105853--105920	16	4.1	15	77	22	66	85	1	11	1	0.74
105853--105920	21	3.1	22	84	12	79	85	1	11	1	0.74
105853--105923	29	2.5	28	84	8	90	83	1	14	1	0.79
107458--107549	36	2.4	39	84	12	111	23	22	15	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107495--107616	63	1.9	63	88	3	183	26	19	13	40	1.89
107621--107703	21	4.2	21	73	19	79	27	22	13	36	1.92
107653--107703	22	2.4	21	90	3	75	27	25	11	35	1.91
108220--108434	44	4.9	44	68	8	114	29	20	19	30	1.97
108189--108444	133	1.9	133	92	0	431	30	20	19	29	1.97
108359--108551	107	1.8	107	87	2	289	31	22	19	27	1.98
108203--108948	240	3.0	243	83	7	795	30	20	19	30	1.97
108446--109298	133	6.4	133	85	3	1024	30	19	20	30	1.97
108745--109112	44	8.4	44	68	7	165	30	19	20	29	1.97
109895--109988	3	31.3	3	91	4	154	34	1	0	64	1.00
110168--110211	22	2.0	22	82	13	54	47	11	29	11	1.74
110229--110625	146	2.7	145	80	8	406	36	18	26	17	1.94
110683--110724	20	2.1	20	86	8	59	28	9	0	61	1.27
117195--117245	13	3.8	14	82	15	63	74	3	17	3	1.12
117193--117245	28	2.0	27	89	10	83	75	3	16	3	1.10
118378--118472	32	2.9	32	87	1	136	29	10	21	38	1.86
119068--119383	106	3.0	106	87	0	436	34	23	18	22	1.96
119634--119725	29	3.4	29	70	20	99	39	20	7	32	1.81
119714--119902	37	5.4	37	69	16	141	28	17	12	41	1.86
119690--119929	102	2.4	102	92	0	390	32	17	12	38	1.86
119514--120157	255	2.5	254	81	5	746	30	18	11	38	1.87
119960--120062	36	2.8	37	92	2	181	28	21	13	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119973--120159	102	1.8	102	82	6	245	28	20	11	39	1.88
120072--120193	36	3.4	36	80	7	140	26	20	12	40	1.87
120179--120277	42	2.5	39	83	12	123	43	23	8	25	1.81
121559--121598	17	2.3	17	95	4	71	57	0	20	22	1.41
123580--123613	8	4.1	8	96	3	59	38	23	23	14	1.92
124586--125861	22	59.5	22	86	5	1805	48	11	0	39	1.42
124588--125861	279	4.6	282	88	5	1799	48	11	0	39	1.42
125851--125890	12	3.6	12	83	16	59	47	0	7	45	1.31
129887--129929	19	2.3	19	95	0	77	27	2	32	37	1.70
131912--131959	25	1.9	25	95	0	87	54	0	2	43	1.12

Tables:   1   2