genome.fa.s8574.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008574.1 Hibiscus syriacus cultivar Beakdansim tig00111503_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  414859

Tables:   1   2   

This is table  2  of  2  ( 172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
281846--281886	18	2.3	18	100	0	82	39	7	4	48	1.52
285748--285863	2	59.0	2	77	19	120	47	0	4	48	1.21
285927--285972	2	23.5	2	95	4	85	50	0	0	50	1.00
287001--287033	16	2.1	16	94	0	57	78	0	9	12	0.95
287510--287558	23	2.1	23	85	7	64	61	6	2	30	1.32
292636--292668	16	2.1	16	94	0	57	78	0	9	12	0.95
293145--293193	23	2.1	23	85	7	64	59	10	2	28	1.41
298286--298406	62	2.0	61	87	8	174	28	11	16	42	1.83
298564--298616	13	3.8	13	77	18	52	58	0	0	41	0.98
304482--304526	21	2.1	21	88	8	65	31	15	6	46	1.72
312780--312843	18	3.6	18	73	23	62	53	29	12	4	1.59
329302--329347	18	2.6	18	76	13	51	54	6	0	39	1.26
332447--332688	81	3.0	81	88	0	340	33	21	20	24	1.97
332448--332733	81	3.6	78	85	3	288	33	21	21	23	1.97
336350--336439	2	50.5	2	73	22	76	53	0	0	46	1.00
336349--336441	30	3.1	29	79	15	93	53	0	0	46	1.00
336350--336439	21	4.1	23	71	18	77	53	0	0	46	1.00
338575--338733	81	2.0	81	80	7	180	33	11	30	24	1.90
341854--342077	79	2.8	81	87	6	319	35	26	18	19	1.95
342045--342099	23	2.4	23	96	3	103	29	29	16	25	1.97
341964--342179	104	2.1	103	95	1	389	32	26	18	22	1.97
342068--342268	80	2.5	80	96	0	366	29	25	21	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
341885--342261	184	2.1	183	90	3	607	31	25	20	22	1.98
344098--344131	18	1.9	18	94	5	61	29	17	0	52	1.45
351031--351182	76	2.0	76	100	0	304	31	17	11	39	1.85
351351--351404	25	2.2	24	90	3	81	29	31	3	35	1.75
358540--358591	24	2.2	24	89	0	77	25	13	11	50	1.75
369239--369268	15	2.0	15	100	0	60	13	40	26	20	1.89
370825--370877	21	2.5	21	93	0	88	32	18	16	32	1.94
384437--384506	35	2.0	35	100	0	140	28	14	2	54	1.54
386218--386252	14	2.5	14	85	0	52	25	0	22	51	1.48
392823--392880	22	2.6	22	77	0	62	20	15	13	50	1.78
393171--393200	2	15.5	2	93	6	53	53	0	0	46	1.00
393202--393400	12	16.1	12	67	10	69	46	1	6	46	1.35
393183--393573	35	10.7	37	70	20	195	46	1	5	45	1.37
393187--393561	38	10.4	35	71	18	247	46	1	5	45	1.38
393289--393351	25	2.5	24	82	7	72	42	1	7	47	1.42
393312--393562	35	6.7	36	77	14	208	45	1	5	46	1.39
393314--393573	73	3.5	72	77	13	233	46	1	5	46	1.38
393211--393425	98	2.2	98	85	7	247	46	1	6	45	1.36
393435--393524	43	2.1	42	82	10	103	46	2	4	46	1.35
393583--393642	6	10.3	6	75	13	63	18	1	1	78	0.92
393597--393653	16	3.5	17	76	11	66	17	5	1	75	1.07
393575--393642	23	3.0	23	77	12	79	16	2	2	77	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
394883--394924	17	2.5	17	82	14	52	9	0	4	85	0.72
394940--394977	13	2.7	14	88	8	51	26	5	0	68	1.11
394757--395052	136	2.1	141	82	9	358	20	8	3	67	1.31
398424--398552	69	1.9	69	91	0	213	44	2	4	48	1.36
399032--399070	18	2.1	19	86	13	55	28	0	5	66	1.12
400252--400363	35	3.2	35	84	0	134	36	0	21	41	1.60
401604--401647	23	1.9	22	86	9	61	38	2	0	59	1.10
411470--411541	35	2.1	35	100	0	144	38	11	29	20	1.87

Tables:   1   2

The End!