genome.fa.s8575.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008575.1 Hibiscus syriacus cultivar Beakdansim tig00111504_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  896659

Tables:   1   2   3   4   

This is table  3  of  4  ( 369 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
576457--576863	26	16.5	25	75	16	252	42	1	9	45	1.48
576402--576828	98	4.1	98	78	16	491	43	2	9	44	1.48
576460--576747	124	2.3	123	94	2	497	44	2	9	43	1.49
576584--576828	97	2.5	98	94	2	431	43	2	8	45	1.47
576841--576883	14	3.2	13	83	3	50	41	4	4	48	1.44
576868--576900	17	1.9	17	93	0	57	36	6	12	45	1.66
579138--579200	33	1.9	33	87	6	92	50	12	0	36	1.41
579257--579347	46	1.9	48	86	8	134	46	12	0	41	1.41
579257--579360	46	2.2	48	84	8	133	47	12	0	40	1.41
579329--579415	40	2.2	39	79	8	95	45	10	1	42	1.45
579548--579606	21	2.9	21	92	2	93	1	37	0	61	1.07
579609--579653	23	2.0	23	95	4	83	8	40	4	46	1.55
579750--579784	18	1.9	18	100	0	70	28	25	17	28	1.97
579789--579862	37	2.0	37	97	2	141	24	13	45	16	1.83
579911--580019	29	3.8	29	95	2	184	22	32	31	14	1.94
580052--580217	28	5.6	28	78	13	188	10	35	19	33	1.87
580033--580223	61	3.1	61	96	0	355	10	34	20	34	1.87
580166--580245	22	3.4	22	73	18	79	8	38	18	33	1.82
580245--580278	11	3.1	11	95	0	59	20	17	23	38	1.93
580272--580306	13	2.8	13	95	4	63	14	37	17	31	1.89
582772--582831	31	1.9	31	86	0	84	53	15	10	21	1.70
583059--583174	58	2.0	58	100	0	232	31	27	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
588492--588556	29	2.2	29	94	0	112	13	29	23	33	1.93
592224--592271	2	24.0	2	100	0	96	50	0	0	50	1.00
595089--595279	96	2.0	96	92	1	321	37	7	18	36	1.80
597777--597814	2	19.0	2	100	0	76	50	0	0	50	1.00
598436--598507	2	36.0	2	100	0	144	50	0	0	50	1.00
599331--599408	40	2.0	40	81	0	93	48	12	2	35	1.55
605802--605831	2	15.0	2	100	0	60	50	0	0	50	1.00
606850--606910	2	30.5	2	100	0	122	50	0	0	49	1.00
621233--621289	20	2.8	20	89	7	89	38	10	24	26	1.88
621450--621515	34	1.9	34	85	11	91	48	3	1	46	1.26
621904--621928	2	12.5	2	100	0	50	52	0	0	48	1.00
627895--629936	106	19.3	106	91	1	3186	34	25	17	22	1.96
636558--636596	12	3.2	12	85	7	51	64	2	0	33	1.08
654134--654249	60	1.9	60	82	3	144	37	12	11	39	1.78
655343--655439	29	3.3	29	95	0	176	28	19	23	27	1.98
655410--655451	22	2.0	21	86	9	59	26	21	21	30	1.98
657250--657306	21	2.7	21	91	0	78	21	29	24	24	1.99
661268--661339	33	2.2	33	87	0	99	61	16	8	13	1.56
661534--661584	19	2.7	19	96	0	93	29	27	21	21	1.99
661612--661702	21	4.3	21	97	0	164	28	28	19	23	1.98
661709--661772	21	3.0	20	78	12	67	26	20	20	32	1.97
662405--662483	41	1.9	41	84	5	106	30	21	20	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
662424--662482	20	2.9	19	76	16	57	28	20	22	28	1.98
662490--662543	21	2.6	21	93	0	90	20	22	27	29	1.98
664195--664300	43	2.6	41	77	12	110	51	0	6	40	1.34
669737--669775	21	1.9	21	94	5	71	15	23	25	35	1.94
669738--669836	19	5.2	19	73	16	62	16	24	27	32	1.96
669740--669811	29	2.4	29	86	6	92	13	22	29	34	1.93
669833--669885	5	9.8	5	76	15	52	18	50	22	7	1.72
669832--669892	17	3.3	17	79	20	77	18	47	22	11	1.80
669833--669899	22	3.0	22	93	4	107	17	46	23	11	1.82
670775--670898	63	2.0	63	82	6	153	16	28	29	25	1.97
677076--677167	10	9.6	9	75	13	85	15	25	29	30	1.95
677076--677175	19	5.2	19	79	14	89	15	26	29	30	1.95
677075--677149	29	2.5	31	91	8	129	16	25	28	30	1.96
677171--677239	17	4.1	17	98	0	129	15	46	24	13	1.82
678124--678247	63	2.0	63	82	6	153	16	28	29	25	1.97
682016--682042	2	13.5	2	100	0	54	48	0	0	51	1.00
683637--683796	84	1.9	85	97	1	304	22	31	7	38	1.82
684845--684935	20	4.9	19	71	15	57	24	16	29	29	1.96
685399--685458	26	2.3	25	80	8	66	40	10	8	41	1.69
687515--688100	214	2.8	206	96	3	1065	31	20	13	34	1.92
689912--690056	31	4.7	31	93	1	247	39	21	18	20	1.93
690651--690816	64	2.6	64	80	3	174	27	20	18	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
692518--692580	30	2.1	29	85	11	83	49	12	6	31	1.66
693630--693692	9	7.0	9	83	7	58	46	20	4	28	1.71
694868--694946	30	2.6	30	76	11	81	32	17	7	41	1.78
699821--699907	29	2.9	29	83	6	95	31	13	8	47	1.72
699821--699881	29	2.1	30	90	3	97	29	11	11	47	1.75
704270--704328	30	2.0	30	89	0	91	15	30	18	35	1.92
706230--706618	186	2.1	184	91	3	622	46	7	3	42	1.48
714792--715182	186	2.1	185	92	1	642	45	8	2	43	1.48
715788--715850	28	2.2	28	97	0	117	33	23	7	34	1.84
716909--716952	15	2.7	16	83	13	54	52	15	4	27	1.63
721326--721376	22	2.4	21	81	12	59	21	0	7	70	1.12
726969--727021	2	26.5	2	100	0	106	50	0	0	49	1.00
729492--729521	6	5.0	6	91	0	51	3	33	0	63	1.11
738415--738451	14	2.5	15	83	16	51	32	0	5	62	1.18
747652--747724	35	2.1	35	97	0	137	32	21	16	28	1.95
747733--747825	29	3.1	29	61	11	71	33	20	13	32	1.92
747712--747832	60	2.0	60	100	0	242	30	23	13	33	1.93
751135--751185	23	2.3	23	82	3	59	37	5	17	39	1.74
754884--755086	72	2.8	71	82	5	257	33	15	21	28	1.94
758208--758259	21	2.5	20	81	6	59	57	1	1	38	1.21
763021--763105	29	3.0	28	83	8	109	41	10	10	37	1.74
764450--764674	32	7.2	31	70	13	140	52	2	2	42	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
764517--764541	13	1.9	13	100	0	50	68	0	0	32	0.90
772043--772082	10	3.8	10	83	9	53	60	0	0	40	0.97
783712--783863	60	2.5	60	82	7	159	42	4	19	33	1.71
784026--784063	20	1.9	20	88	0	58	44	0	0	55	0.99
784010--784069	25	2.4	25	81	8	68	45	1	1	51	1.21
784779--784874	29	3.1	30	79	16	106	43	10	9	36	1.71
786920--787032	59	1.9	59	80	10	133	44	7	20	28	1.77
788849--788885	14	2.6	14	100	0	74	21	27	37	13	1.91
798602--798945	171	2.0	172	98	0	672	25	13	20	40	1.89
800165--800198	17	2.1	16	88	5	50	14	8	0	76	1.01
802061--802103	22	2.0	22	81	9	52	46	0	9	44	1.35
805801--805836	18	2.0	18	94	0	63	38	13	16	30	1.88
811413--811526	54	2.1	54	95	0	201	27	20	17	35	1.95
813367--813418	21	2.5	21	87	0	68	21	21	32	25	1.98
814296--814389	30	3.1	30	81	0	107	10	10	53	25	1.68
814358--814404	21	2.2	21	84	0	58	12	17	53	17	1.73
814373--814458	42	2.0	42	84	0	109	15	11	54	18	1.70
823974--824002	2	14.5	2	100	0	58	51	0	0	48	1.00
829779--829808	2	15.0	2	100	0	60	50	0	50	0	1.00
834771--834825	26	2.1	26	100	0	110	54	21	3	20	1.59
837457--837509	28	2.0	26	85	14	72	52	18	9	18	1.72
837553--837598	23	2.0	23	100	0	92	39	17	17	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
843855--843892	18	2.1	18	95	0	67	39	23	0	36	1.55
844787--844828	22	1.9	22	85	9	59	33	0	2	64	1.07
844830--844878	14	3.8	14	69	20	52	42	0	0	57	0.99
844894--844955	19	3.3	19	78	15	58	37	1	0	61	1.06
845240--845361	58	2.0	57	81	12	138	45	2	11	40	1.54
845567--845626	31	1.9	31	93	0	102	43	10	6	40	1.64
846243--846411	60	2.8	59	77	8	153	33	19	4	42	1.72
865874--865926	22	2.4	22	96	0	97	39	5	22	32	1.78
865944--865983	21	1.9	22	85	10	57	62	7	7	22	1.47
867766--867812	20	2.3	21	75	10	53	42	6	0	51	1.27

Tables:   1   2   3   4