genome.fa.s8576.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008576.1 Hibiscus syriacus cultivar Beakdansim tig00111505_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  399473

Tables:   1   2   

This is table  2  of  2  ( 193 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
259981--260011	14	2.2	14	94	0	53	83	9	0	6	0.79
268740--269129	188	2.1	188	93	2	658	24	12	25	36	1.91
269347--269429	38	2.4	34	80	11	89	14	12	36	37	1.83
269360--269435	38	2.0	38	87	5	109	14	10	35	39	1.81
269094--269553	217	2.1	217	88	5	690	23	11	27	36	1.90
271041--271152	35	3.2	35	87	0	152	40	23	0	35	1.61
272765--272875	35	3.2	35	85	3	118	36	1	20	40	1.63
272785--272875	35	2.6	35	89	1	130	35	1	21	41	1.61
273876--273916	21	2.0	21	85	0	55	43	29	9	17	1.80
276804--276945	45	3.2	45	89	0	185	16	30	17	34	1.93
281661--281726	3	22.0	3	90	6	107	65	1	0	33	1.02
283014--283047	11	3.2	11	87	8	52	0	20	41	38	1.53
287725--288688	477	2.0	481	97	1	1821	31	13	22	31	1.93
291075--291110	17	2.1	17	100	0	72	36	19	22	22	1.95
294676--294772	44	2.2	45	90	3	151	27	12	21	38	1.89
302237--302303	16	4.1	16	80	14	66	74	1	17	5	1.09
302252--302317	28	2.5	26	72	16	64	74	1	18	6	1.10
302243--302317	17	4.3	16	71	18	53	73	1	18	6	1.12
303690--304321	55	11.6	55	85	5	727	28	16	25	30	1.97
303690--304321	111	5.8	111	84	6	749	28	16	25	30	1.97
303742--304341	272	2.2	274	84	6	759	28	16	25	30	1.97
309755--309795	22	1.9	22	85	14	59	51	14	0	34	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
310260--310298	19	2.1	19	90	0	60	41	12	7	38	1.72
322425--322517	21	4.5	21	75	4	91	40	17	24	17	1.90
322506--322620	20	5.7	20	80	6	106	31	25	18	25	1.97
322427--322517	41	2.2	41	98	0	173	41	16	25	16	1.89
322503--322640	41	3.4	41	77	6	145	34	23	17	24	1.96
322808--322851	22	2.0	22	90	0	70	20	43	15	20	1.88
323114--323173	20	3.0	20	85	0	66	20	18	20	41	1.90
323921--323978	14	3.9	14	77	16	62	8	13	25	51	1.70
323916--323994	32	2.4	33	89	2	124	10	16	24	49	1.76
323967--324033	19	3.5	19	83	4	89	14	23	23	37	1.93
323979--324033	20	2.8	19	89	5	83	16	25	23	34	1.95
324061--324132	25	2.8	26	72	10	76	23	11	12	52	1.71
325893--325998	33	3.2	33	85	5	160	42	19	22	15	1.88
325906--326004	19	5.7	19	66	22	83	42	19	22	16	1.89
325999--326042	20	2.2	20	88	4	63	15	18	22	43	1.88
325993--326076	19	4.6	19	74	16	70	15	21	20	42	1.88
326183--326219	14	2.6	14	82	0	56	45	21	0	32	1.52
327579--327645	21	3.2	21	68	4	55	19	20	35	23	1.95
327579--327701	42	2.9	41	79	7	113	22	18	36	21	1.95
329679--329735	20	2.8	21	80	12	57	45	19	21	14	1.85
329728--329764	14	2.6	14	91	0	56	40	27	24	8	1.83
329704--329797	47	2.0	48	85	2	127	39	26	23	10	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
329788--329833	19	2.4	19	100	0	92	47	21	19	10	1.80
329834--329870	19	1.9	19	94	0	65	2	16	24	56	1.53
330421--330534	20	5.7	20	82	6	113	24	19	24	31	1.98
330605--330645	21	2.0	21	85	0	55	34	31	17	17	1.93
331029--331089	21	2.9	21	83	9	88	47	26	0	26	1.52
333843--333872	2	15.0	2	100	0	60	50	0	0	50	1.00
337384--337433	25	2.0	25	96	0	91	50	4	2	44	1.32
342975--343043	29	2.4	29	83	9	95	31	11	15	40	1.84
342924--343093	89	1.9	89	92	0	286	32	16	14	36	1.89
343277--343326	20	2.8	18	80	16	59	58	0	4	38	1.17
343353--343393	22	1.9	21	85	5	55	43	2	2	51	1.28
344464--344665	48	4.2	48	87	1	280	24	8	34	31	1.86
347564--347609	22	2.1	22	87	0	65	23	8	15	52	1.70
347718--347776	31	2.0	30	90	6	93	30	11	3	54	1.53
351576--351648	31	2.4	31	86	6	96	27	12	10	49	1.74
366938--367031	29	3.2	29	93	0	152	36	10	24	28	1.89
367556--367598	18	2.5	17	85	7	61	25	4	2	67	1.22
367766--367800	18	1.9	18	88	0	52	45	5	0	48	1.26
378735--378813	25	3.3	24	82	5	88	39	17	13	29	1.89
378785--378835	23	2.2	23	82	0	57	39	15	13	31	1.87
381369--381399	2	16.0	2	93	6	55	48	0	0	51	1.00
382502--382526	13	1.9	13	100	0	50	36	8	0	56	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
385641--385757	8	14.8	8	96	1	209	39	24	10	25	1.87
387123--387159	18	2.1	18	100	0	74	40	16	5	37	1.71
388182--388210	3	9.7	3	100	0	58	0	0	31	68	0.89
388225--388294	32	2.3	31	90	5	106	45	7	10	37	1.65
393530--393654	59	2.1	57	82	10	146	36	20	4	39	1.72
394674--394712	18	2.2	17	86	4	51	56	2	0	41	1.13
398171--398237	31	2.3	30	87	7	102	38	14	19	26	1.91

Tables:   1   2

The End!