genome.fa.s8586.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008586.1 Hibiscus syriacus cultivar Beakdansim tig00111522_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  346163

Tables:   1   2   

This is table  2  of  2  ( 193 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
210362--210395	13	2.6	13	95	0	59	47	23	26	2	1.66
211229--211264	18	2.1	18	89	5	56	38	0	0	61	0.96
211236--211293	18	3.3	18	75	15	59	36	0	1	62	1.06
216445--216472	2	14.0	2	100	0	56	50	0	0	50	1.00
216657--216688	16	2.1	15	94	5	55	78	0	21	0	0.76
218785--219064	93	3.0	93	93	1	456	28	13	21	36	1.91
218967--219749	114	6.9	114	96	0	1372	30	13	21	35	1.91
218967--219946	342	2.9	342	91	3	1549	30	13	21	34	1.92
219536--219946	207	2.0	207	91	1	673	29	14	21	33	1.93
222782--222973	93	2.1	92	91	3	305	36	20	14	28	1.92
222874--223656	114	6.9	114	96	0	1390	35	21	13	30	1.91
223559--223838	93	3.0	93	93	1	456	36	21	13	28	1.91
225935--225966	16	2.1	15	94	5	55	0	21	0	78	0.76
226151--226185	2	17.5	2	100	0	70	51	0	0	48	1.00
231320--231379	18	3.3	18	79	11	68	65	1	0	33	1.03
232221--232254	13	2.6	13	95	0	59	2	26	23	47	1.66
232709--232789	3	26.7	3	77	7	74	59	0	0	40	0.98
235183--235221	19	2.1	19	95	0	69	33	28	15	23	1.95
235326--235391	20	3.3	20	82	0	87	25	27	18	28	1.98
236463--236499	14	2.6	14	91	4	56	51	21	21	5	1.68
238146--238185	18	2.2	18	90	0	62	52	27	2	17	1.57
238351--238675	20	16.9	20	79	8	343	34	20	19	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
238402--238675	74	3.6	74	87	3	361	34	21	19	24	1.97
238495--238714	94	2.3	92	81	10	234	35	21	20	23	1.96
240223--240302	21	3.8	21	75	5	72	21	20	38	20	1.93
240239--240331	42	2.2	42	80	0	105	23	17	37	21	1.94
240802--240845	20	2.2	20	95	0	79	50	22	13	13	1.77
240832--240900	20	3.5	20	87	0	102	36	26	20	17	1.94
240905--240944	20	2.0	20	85	0	53	52	20	12	15	1.74
240951--241041	34	2.7	34	82	0	110	15	18	18	47	1.83
241017--241065	20	2.5	20	96	0	89	20	22	20	36	1.95
242976--243043	20	3.4	20	83	0	73	42	22	16	19	1.89
243036--243096	14	4.0	14	75	19	59	45	22	21	9	1.81
243494--243571	22	3.5	22	87	3	104	20	15	42	21	1.89
243741--243805	20	3.2	20	91	0	103	26	16	29	27	1.97
243924--243960	19	1.9	19	94	0	65	21	16	29	32	1.95
249668--249698	11	2.8	11	100	0	62	58	16	9	16	1.63
253022--253066	20	2.2	20	96	0	81	35	13	24	26	1.92
253095--253127	17	1.9	17	93	0	57	33	9	12	45	1.73
259774--259798	6	4.2	6	100	0	50	36	48	16	0	1.46
260399--260474	20	3.8	20	87	0	107	21	18	22	38	1.94
260404--260493	40	2.3	39	80	7	101	21	16	24	37	1.93
261038--261071	15	2.4	14	90	5	50	38	0	14	47	1.45
264585--264645	3	20.7	3	88	3	79	36	4	0	59	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
264680--264717	15	2.5	15	86	0	58	34	34	26	5	1.79
266339--266397	24	2.5	24	91	0	100	37	6	15	40	1.74
276022--276131	42	2.6	42	75	5	107	23	18	37	20	1.94
276613--276701	20	4.4	20	85	5	108	35	24	17	21	1.95
276708--276833	53	2.4	52	78	6	128	18	18	19	43	1.88
276746--276885	20	7.3	20	74	13	107	19	16	21	42	1.89
276714--276886	93	1.9	87	86	6	238	17	17	20	43	1.88
278711--278797	20	4.7	20	73	16	87	39	25	18	17	1.92
279148--279213	22	3.0	22	84	0	87	24	15	36	24	1.93
279412--279504	20	4.7	20	95	0	150	20	17	21	40	1.91
288970--289095	46	2.8	45	91	3	200	38	7	23	30	1.82
293757--293995	119	2.0	119	95	1	435	35	15	25	23	1.94
295986--296125	36	3.9	35	87	6	194	19	23	20	37	1.94
295986--296130	72	2.0	71	92	6	240	18	23	19	38	1.93
301460--301488	2	14.5	2	100	0	58	48	0	0	51	1.00
302078--302174	44	2.2	44	94	0	167	31	3	18	46	1.65
302186--302316	66	2.0	66	96	0	244	30	15	15	38	1.88
311611--311694	33	2.7	30	78	10	96	3	28	14	53	1.57
311611--311706	30	3.0	32	75	9	88	5	31	12	51	1.62
322841--322884	5	8.8	5	92	0	61	4	40	36	18	1.71
322886--323142	6	42.8	6	92	0	325	10	17	49	23	1.77
322886--323142	24	10.7	24	91	0	361	10	17	49	23	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328980--329028	5	9.8	5	88	0	62	4	38	36	20	1.72
329026--329122	6	16.2	6	89	0	122	7	16	47	28	1.73
329030--329118	24	3.7	24	92	0	142	7	16	48	26	1.74
334988--335031	5	8.8	5	87	0	52	4	38	36	20	1.73
335029--335119	6	15.2	6	90	0	128	5	16	47	30	1.69
340984--341032	6	8.2	6	95	0	89	2	16	48	32	1.57
340988--341042	24	2.3	24	93	3	94	3	14	50	30	1.60

Tables:   1   2

The End!