genome.fa.s8586.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008586.1 Hibiscus syriacus cultivar Beakdansim tig00111522_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  346163

Tables:   1   2   

This is table  1  of  2  ( 193 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10525--10622	49	2.0	49	95	0	178	27	15	19	37	1.92
12712--12755	16	2.6	17	85	7	54	47	0	0	52	1.00
13123--13171	21	2.5	20	83	6	64	53	2	0	44	1.12
13771--13821	26	2.0	26	96	0	93	27	5	15	50	1.67
13856--13910	26	2.1	26	86	0	74	29	1	18	50	1.57
20228--20252	13	1.9	13	100	0	50	48	0	4	48	1.20
22707--22750	21	2.0	23	86	8	65	47	4	0	47	1.22
24658--24702	16	2.6	17	86	6	56	48	0	0	51	1.00
24685--24720	14	2.3	17	86	13	51	52	2	2	41	1.30
24708--24893	84	2.2	86	92	4	310	41	3	3	51	1.38
25133--25193	13	4.8	13	69	28	51	50	1	0	47	1.10
25135--25189	19	2.9	19	79	10	69	52	1	0	45	1.11
25133--25208	25	3.0	24	80	14	75	51	1	0	47	1.09
27056--27115	30	2.0	30	96	3	113	30	3	18	48	1.64
27817--27853	15	2.4	16	81	9	58	24	5	5	64	1.36
32477--32501	13	1.9	13	100	0	50	48	0	4	48	1.20
32598--32627	15	2.0	15	93	0	51	56	3	0	40	1.16
36995--37039	16	2.6	17	86	6	56	48	0	0	51	1.00
37149--37203	26	2.1	27	80	12	62	41	3	3	50	1.37
37046--37237	88	2.2	88	95	2	345	41	3	3	51	1.37
37046--37258	87	2.4	88	86	6	310	41	3	3	51	1.36
37492--37540	21	2.5	20	83	6	64	53	2	0	44	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38028--38082	26	2.1	26	82	0	65	29	3	18	49	1.64
38539--38565	3	9.0	3	100	0	54	33	0	0	66	0.92
40211--40248	15	2.4	17	78	13	53	26	5	5	63	1.37
44577--44601	13	1.9	13	100	0	50	48	0	4	48	1.20
47127--47169	21	2.0	23	86	9	63	48	4	0	46	1.22
47344--47372	14	2.1	14	100	0	58	55	6	0	37	1.27
47787--47837	26	2.0	26	96	0	93	29	5	13	50	1.65
47872--47926	26	2.1	26	86	0	74	29	1	18	50	1.57
52995--53038	19	2.2	20	84	4	54	43	0	0	56	0.99
53320--53344	13	1.9	13	100	0	50	48	0	4	48	1.20
57878--58070	88	2.2	88	97	1	363	41	3	3	51	1.37
58326--58378	19	2.7	18	75	16	52	49	1	0	49	1.12
58321--58397	27	2.9	27	79	11	79	50	1	0	48	1.09
58964--59014	26	2.0	26	96	0	93	27	5	15	50	1.67
59049--59103	26	2.1	26	86	0	74	27	3	20	49	1.65
61224--61263	15	2.5	17	80	12	57	27	5	5	62	1.37
65580--65643	21	3.2	19	76	13	58	46	1	1	50	1.20
65599--65662	26	2.5	26	73	19	62	45	1	1	51	1.20
65640--65685	19	2.3	20	81	3	58	43	0	0	56	0.99
65961--65986	13	2.0	13	100	0	52	46	0	7	46	1.31
65335--66043	369	1.9	368	82	8	888	37	9	9	43	1.70
68514--68557	21	2.0	23	86	8	65	47	4	0	47	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68731--68759	14	2.1	14	100	0	58	55	6	0	37	1.27
69720--69748	15	1.9	15	100	0	58	20	13	34	31	1.92
79830--79883	21	2.7	20	82	2	63	48	3	0	48	1.19
80524--80568	19	2.3	20	80	3	56	42	2	0	55	1.12
85250--85315	34	1.9	34	81	6	80	53	1	3	42	1.25
85249--85325	34	2.4	32	79	12	77	53	1	2	42	1.23
85354--85404	25	2.0	25	92	7	86	33	3	15	47	1.64
93941--93968	2	14.0	2	100	0	56	50	0	50	0	1.00
97156--97187	2	16.0	2	100	0	64	0	50	0	50	1.00
106276--106329	22	2.3	23	90	9	83	48	14	3	33	1.62
106349--106431	33	2.5	33	75	11	89	44	2	1	51	1.22
111917--111970	21	2.7	20	82	2	63	48	0	3	48	1.19
115970--116006	15	2.3	17	81	13	51	64	5	2	27	1.28
116746--116810	26	2.6	25	75	4	69	50	20	1	27	1.57
118379--118431	19	2.7	19	80	11	63	47	0	1	50	1.12
118685--118876	88	2.2	87	95	2	343	51	3	3	41	1.35
123435--123459	13	1.9	13	100	0	50	48	4	0	48	1.20
123377--124084	361	1.9	369	83	6	924	43	8	9	37	1.69
130256--130310	26	2.1	26	86	0	74	50	18	1	29	1.57
130345--130395	26	2.0	26	96	0	93	50	15	5	27	1.67
130810--130838	14	2.1	14	100	0	58	37	0	6	55	1.27
131012--131055	21	2.0	23	86	8	65	47	0	4	47	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134602--134643	21	2.0	20	86	4	57	42	0	2	54	1.13
134905--135098	88	2.2	89	93	2	331	51	4	3	41	1.38
135116--135149	16	2.1	16	88	5	50	50	0	0	50	1.00
137241--137338	49	2.0	49	93	0	169	38	19	14	27	1.90
139959--140002	21	2.2	20	83	4	52	59	2	2	36	1.23
139969--140028	10	6.0	10	71	13	52	55	0	3	41	1.16
140053--140077	13	1.9	13	100	0	50	48	4	0	48	1.20
140339--140382	19	2.2	20	84	4	54	56	0	0	43	0.99
140362--140425	26	2.5	26	73	19	62	51	1	1	45	1.20
140407--140435	13	2.1	14	93	6	51	51	0	0	48	1.00
146899--146953	26	2.1	26	86	0	74	50	18	1	29	1.57
146988--147038	26	2.0	26	96	0	93	50	15	5	27	1.67
147632--147673	21	2.0	20	86	4	57	42	0	2	54	1.13
150186--150283	49	2.0	49	95	0	178	37	19	15	27	1.92
153460--153488	2	14.5	2	100	0	58	51	0	0	48	1.00
160018--160065	2	24.0	2	100	0	96	0	50	0	50	1.00
161138--161657	265	2.0	263	97	1	979	29	26	19	25	1.98
169067--169103	7	5.4	7	87	6	58	27	29	27	16	1.97
169066--169103	20	1.9	20	100	0	76	28	28	26	15	1.96
175895--175928	18	1.9	17	88	5	50	55	5	5	32	1.48
176908--176961	23	2.3	23	80	0	63	31	16	11	40	1.84
177033--177074	23	1.9	23	85	9	61	35	19	11	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
181465--181540	36	2.1	36	100	0	152	19	18	13	48	1.80
186157--186256	34	2.8	36	92	6	168	44	14	13	29	1.82
186154--186292	37	3.8	37	84	5	167	41	13	12	31	1.83
186794--186831	20	1.9	20	88	0	58	26	7	2	63	1.35
186842--186876	16	2.1	18	89	10	56	25	8	0	65	1.21
190663--190744	16	5.1	16	74	22	59	76	8	14	0	1.00
190669--190758	23	3.9	22	76	14	74	77	7	13	1	1.03
191396--191444	22	2.2	22	92	0	80	32	24	14	28	1.94
192373--192442	36	1.9	36	94	0	122	22	22	14	40	1.90
192384--192916	65	7.9	63	74	14	320	30	19	12	38	1.88
192523--192654	36	3.6	36	88	4	192	28	19	12	40	1.87
192393--192847	138	3.4	137	80	8	479	29	19	12	38	1.88
192745--192915	68	2.6	67	84	5	213	31	20	9	38	1.84
193506--194112	105	5.8	105	93	1	936	33	26	18	21	1.96
194384--194485	34	2.9	36	91	5	172	44	13	14	27	1.83
195069--195103	16	2.1	18	89	10	56	25	8	0	65	1.21
198169--198209	18	2.3	18	87	4	57	29	7	2	60	1.36
200292--200363	26	3.0	24	68	27	62	26	6	4	62	1.39
200392--200476	35	2.5	33	74	14	82	25	8	11	54	1.64
203477--203594	51	2.3	50	87	5	159	25	22	30	22	1.99
204220--204266	21	2.2	21	80	0	58	21	25	17	36	1.94
204262--204426	20	8.3	20	83	5	183	36	18	19	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
204262--204402	59	2.4	60	83	4	187	35	18	19	26	1.95
205270--205316	24	2.0	24	95	0	85	21	21	21	36	1.96
206111--206147	14	2.6	14	91	4	56	5	21	21	51	1.68
206354--206405	24	2.2	24	82	0	59	36	21	19	23	1.95
207217--207282	20	3.3	20	82	0	87	28	18	27	25	1.98
207378--207423	19	2.4	19	88	3	65	26	15	28	30	1.96
207387--207425	19	2.1	19	95	0	69	23	15	28	33	1.95
209833--209906	3	24.7	3	77	13	64	40	0	0	59	0.97
209833--209905	11	6.6	12	75	22	63	41	0	0	58	0.98
209842--209906	24	2.9	23	78	15	73	43	0	0	56	0.99

Tables:   1   2