genome.fa.s8603.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008603.1 Hibiscus syriacus cultivar Beakdansim tig00111558_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  555603

Tables:   1   2   3   

This is table  2  of  3  ( 287 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
219530--219560	16	1.9	16	100	0	62	51	6	16	25	1.68
219708--219748	19	2.2	19	95	0	73	39	2	9	48	1.49
219989--220341	185	1.9	184	91	1	573	40	3	8	47	1.50
228296--228332	18	2.1	18	100	0	74	56	5	5	32	1.45
232763--232818	26	2.2	25	81	6	67	30	8	0	60	1.27
233601--233656	28	2.0	27	96	3	103	48	10	19	21	1.79
238962--239050	35	2.5	35	98	1	169	47	20	7	24	1.76
243662--243722	31	1.9	32	86	3	88	26	6	11	55	1.59
245703--245782	34	2.3	36	80	6	101	42	8	5	43	1.57
247242--247341	41	2.4	41	85	5	130	35	34	12	19	1.88
247242--247327	42	2.1	42	89	6	131	33	36	11	18	1.87
247602--247647	23	2.0	23	95	0	83	47	8	19	23	1.77
249919--249953	18	1.9	18	100	0	70	22	40	14	22	1.90
261504--261689	93	2.0	93	97	0	354	31	26	15	26	1.96
262860--262888	11	2.5	12	88	11	51	51	0	0	48	1.00
262948--263001	24	2.3	24	87	3	74	40	1	9	48	1.46
271753--271829	39	2.0	39	82	5	93	40	5	1	53	1.32
276358--276388	8	3.8	8	95	4	53	51	0	0	48	1.00
291688--291756	20	3.4	20	69	16	61	34	26	17	21	1.95
291725--291797	20	3.7	20	84	0	101	30	27	16	26	1.97
291698--291811	40	2.8	41	79	2	140	35	25	14	23	1.93
291984--292027	22	2.0	22	95	0	79	22	43	13	20	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
292311--292348	20	1.9	20	88	0	58	10	13	21	55	1.67
292485--292539	25	2.2	24	78	15	58	20	9	18	52	1.71
293975--294054	42	1.9	42	84	0	106	22	16	38	22	1.92
294276--294460	91	2.0	90	88	6	273	45	18	12	22	1.83
296148--296293	33	4.1	38	77	16	132	44	19	22	13	1.85
296157--296246	20	4.9	19	76	16	91	41	22	23	13	1.89
296148--296293	19	8.1	19	71	17	114	44	19	22	13	1.85
296156--296288	52	2.5	53	86	2	187	44	21	21	12	1.85
296902--296995	20	4.7	20	84	2	125	21	21	17	40	1.91
296902--296995	41	2.3	40	87	1	125	21	21	17	40	1.91
296986--297037	21	2.5	22	78	6	63	34	21	26	17	1.95
300492--300580	14	7.0	13	74	17	80	44	0	0	55	0.99
300496--300569	3	25.3	3	78	5	80	43	0	0	56	0.99
301277--301305	13	2.2	13	100	0	58	0	31	62	6	1.22
301995--302033	13	3.0	13	82	10	53	38	0	2	58	1.12
309773--309942	75	2.3	75	80	4	182	34	15	19	30	1.93
311279--311358	22	3.6	22	70	0	70	36	12	11	40	1.79
312028--312669	76	8.4	76	96	0	1149	21	21	21	35	1.96
312819--312907	14	7.0	13	74	17	80	44	0	0	55	0.99
312823--312896	3	25.3	3	78	5	80	43	0	0	56	0.99
313330--313354	12	2.1	12	100	0	50	84	8	8	0	0.79
313604--313632	13	2.2	13	100	0	58	0	31	62	6	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
314321--314359	13	3.0	13	82	10	53	38	0	2	58	1.12
333648--333675	2	14.0	2	100	0	56	50	0	0	50	1.00
347427--347471	20	2.5	18	80	19	58	28	22	4	44	1.72
354537--354589	20	2.7	20	90	0	79	47	22	9	20	1.79
354632--354828	21	9.4	21	85	0	259	23	16	28	30	1.96
354629--354828	42	4.8	42	89	0	292	24	16	28	31	1.96
359464--359510	19	2.5	19	100	0	94	34	8	31	25	1.86
361014--361039	3	8.7	3	100	0	52	0	0	30	69	0.89
363719--363761	2	21.5	2	90	9	70	51	0	2	46	1.13
364095--364146	19	2.6	20	75	6	52	53	1	3	40	1.30
366605--366674	33	2.1	34	89	7	108	47	24	0	28	1.52
366603--366677	35	2.2	34	86	11	109	46	24	0	29	1.53
366673--366747	35	2.1	35	90	0	123	41	0	16	42	1.47
369089--369114	2	13.0	2	100	0	52	50	0	0	50	1.00
369720--369744	10	2.5	10	100	0	50	68	0	0	32	0.90
374260--374290	16	1.9	16	93	0	53	51	12	0	35	1.40
380996--381042	2	23.5	2	100	0	94	48	0	0	51	1.00
394900--394959	23	2.6	23	89	0	84	13	36	25	25	1.92
396858--396899	2	21.0	2	90	0	66	4	47	0	47	1.23
399777--399819	8	5.2	8	78	15	52	34	0	0	65	0.93
399776--399820	9	5.3	9	79	15	51	33	0	0	66	0.92
404240--404295	28	1.9	29	82	7	69	28	17	17	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
405970--405996	13	2.1	13	100	0	54	62	0	0	37	0.95
410318--410408	20	4.6	20	81	9	105	50	18	17	13	1.78
410333--410409	19	3.9	19	80	8	91	49	19	19	11	1.78
410333--410412	40	2.0	41	90	2	126	50	18	20	11	1.77
410435--410505	20	3.6	19	86	5	88	14	23	22	39	1.91
412203--412417	94	2.3	94	95	1	378	21	13	18	46	1.83
414256--414291	14	2.6	14	95	0	63	33	0	22	44	1.53
414398--414448	14	3.1	17	72	21	54	45	17	23	13	1.84
414398--414491	33	2.8	33	90	3	136	46	22	19	11	1.81
414398--414456	19	3.4	19	73	22	74	45	18	22	13	1.84
414430--414507	19	4.4	19	76	18	78	47	24	15	12	1.80
414502--414673	19	9.7	19	69	20	113	15	22	17	44	1.86
414572--414644	20	3.7	19	80	5	83	17	21	19	41	1.91
414631--414658	14	2.0	14	100	0	56	14	21	21	42	1.88
414508--414706	33	5.8	33	79	8	173	15	22	18	43	1.88
414679--414752	20	3.7	20	69	16	62	24	17	25	32	1.97
418129--418169	21	2.0	21	90	0	64	39	17	26	17	1.91
421632--421658	2	13.5	2	100	0	54	48	0	0	51	1.00
422940--422984	21	2.1	21	83	0	54	37	6	6	48	1.56
430470--430538	32	2.2	32	81	2	77	52	4	0	43	1.21
436558--436648	43	2.0	45	91	6	150	29	5	14	50	1.65
439708--439748	21	2.0	21	95	0	73	26	4	0	68	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
440424--440457	13	2.5	14	90	4	52	61	0	2	35	1.11
440530--440616	38	2.5	36	77	18	94	67	1	11	19	1.27
440656--440721	24	2.9	23	75	18	66	74	0	4	21	1.00
441734--441796	29	2.2	29	91	5	101	4	7	28	58	1.47
442265--442295	2	16.0	2	93	6	55	51	0	0	48	1.00
442280--442591	38	8.3	36	73	16	140	42	7	4	45	1.51
442381--442502	40	3.0	41	79	13	119	40	6	4	49	1.48
442275--442559	38	7.4	39	74	14	182	42	7	3	46	1.49
451593--451639	10	4.7	10	81	0	58	57	17	12	12	1.65
451827--451876	24	2.1	24	88	0	73	62	10	10	18	1.54
451831--451883	24	2.2	24	82	0	61	62	11	9	16	1.54
452932--453258	128	2.6	128	99	0	645	23	24	18	33	1.97
453649--453748	33	3.0	34	83	2	139	39	3	4	54	1.35
454266--454338	21	3.5	21	85	7	103	20	26	34	19	1.96
456123--456189	29	2.4	29	75	9	68	56	1	0	41	1.08
456107--456182	29	2.4	29	80	10	80	59	0	0	40	0.98
456110--456182	32	2.4	31	79	6	87	58	0	0	41	0.98
462300--462347	25	1.9	25	87	8	71	33	4	6	56	1.44
462323--462429	40	2.6	40	94	2	178	38	4	6	50	1.49
462496--462547	24	2.2	24	82	6	61	26	17	13	42	1.86
462734--462800	22	3.0	23	77	4	82	38	10	17	32	1.84
467164--467193	3	10.0	3	100	0	60	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
467483--467527	23	2.0	23	90	0	72	44	0	6	48	1.29
468822--469158	143	2.4	143	86	3	489	35	9	18	36	1.83
479627--479995	20	18.5	20	85	4	458	34	26	18	20	1.96
480669--480715	24	2.0	24	87	8	69	25	14	21	38	1.92
480890--480914	12	2.1	12	100	0	50	72	0	28	0	0.86
483216--483522	19	17.4	19	79	16	367	47	17	20	14	1.82
483216--483544	33	9.5	34	83	13	244	46	17	20	14	1.83
483244--483522	52	5.2	52	89	8	299	47	16	21	14	1.82
483321--483375	14	3.6	14	73	21	56	45	20	23	10	1.82
483283--483544	52	4.9	52	87	9	354	46	17	20	14	1.83

Tables:   1   2   3