genome.fa.s8603.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008603.1 Hibiscus syriacus cultivar Beakdansim tig00111558_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  555603

Tables:   1   2   3   

This is table  3  of  3  ( 287 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
483216--483560	71	4.9	73	78	15	315	46	17	20	14	1.84
483551--483652	19	5.6	19	85	12	151	14	23	17	44	1.86
483759--483795	14	2.6	14	91	0	65	45	21	0	32	1.52
483790--483862	12	6.0	12	67	20	53	57	16	1	24	1.47
483776--483848	38	1.9	38	97	0	137	53	16	1	28	1.51
485664--485798	19	7.6	19	76	16	137	45	24	19	10	1.81
485720--485776	14	3.7	14	77	20	60	45	24	21	8	1.80
485701--485793	33	2.8	33	98	0	177	47	22	20	9	1.79
485664--485798	52	2.5	54	75	18	131	45	24	19	10	1.81
485794--485922	19	7.3	19	75	17	125	8	17	28	45	1.77
485794--485885	33	2.8	33	93	3	150	7	18	28	45	1.76
485966--486344	92	4.1	93	98	1	735	46	18	12	22	1.83
485966--486344	185	2.0	185	98	1	733	46	18	12	22	1.83
488045--488134	14	5.7	14	74	23	81	42	23	25	8	1.83
488037--488151	33	3.5	33	95	0	212	45	20	24	9	1.81
488044--488156	19	6.8	18	72	23	88	43	22	24	9	1.83
488168--488222	14	3.6	14	73	21	56	9	27	23	40	1.85
488343--488413	33	2.2	33	92	0	115	47	18	22	11	1.80
488594--488648	22	2.5	22	81	0	74	20	16	40	23	1.91
488794--488987	20	9.6	20	82	5	221	19	19	25	35	1.95
488794--488987	60	3.2	60	83	0	253	19	19	25	35	1.95
488980--489056	21	3.7	20	70	13	57	27	16	23	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
489042--489093	20	2.6	20	96	0	95	21	13	26	38	1.90
492242--492285	17	2.6	17	77	0	52	59	0	0	40	0.98
493649--493674	2	13.0	2	100	0	52	50	0	0	50	1.00
504247--504329	35	2.4	35	78	8	89	44	0	0	55	0.99
504525--504576	27	2.0	27	85	11	72	28	5	7	57	1.50
504656--504697	21	2.0	21	85	0	57	50	0	0	50	1.00
511115--511147	18	1.9	17	88	11	50	33	6	0	60	1.21
515396--515430	17	2.1	17	88	0	52	31	17	22	28	1.96
522337--522363	2	13.5	2	100	0	54	51	0	0	48	1.00
524789--524854	23	2.8	22	72	21	53	57	3	0	39	1.14
524842--524880	21	2.0	21	90	10	64	74	0	0	25	0.82
529643--529771	52	2.5	50	86	2	195	26	7	24	41	1.82
530023--530179	42	3.8	41	75	5	118	33	18	21	27	1.96
531594--531622	11	2.6	11	100	0	58	48	27	0	24	1.51
533110--533163	28	1.9	28	85	7	74	29	9	14	46	1.76
539619--539711	21	4.4	21	79	2	80	39	19	39	1	1.59
539635--539727	21	4.4	21	79	4	80	39	19	38	2	1.64
540063--540331	43	6.2	41	73	10	155	29	20	20	29	1.98
541192--541247	23	2.4	23	100	0	112	41	7	0	51	1.29
541888--541916	2	14.5	2	100	0	58	51	0	0	48	1.00
546386--546560	59	3.0	58	78	12	160	40	17	11	30	1.85
546453--546578	59	2.2	59	82	7	150	39	15	11	33	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
546720--546770	24	2.1	24	92	0	84	31	1	9	56	1.43
548832--548860	2	14.5	2	100	0	58	48	0	0	51	1.00
552157--552184	2	14.0	2	100	0	56	50	0	0	50	1.00

Tables:   1   2   3

The End!