genome.fa.s8609.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008609.1 Hibiscus syriacus cultivar Beakdansim tig00111565_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  282724

Tables:   1   2   

This is table  1  of  2  ( 177 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57--101	22	2.0	22	87	12	65	44	17	8	28	1.79
9218--9262	22	2.0	22	87	12	65	28	8	17	44	1.79
7886--9732	615	3.0	615	96	0	3415	29	18	17	34	1.94
16032--16139	48	2.2	49	85	5	137	32	18	30	18	1.95
18895--18964	24	2.8	24	86	4	95	54	1	4	40	1.29
23339--23376	3	12.7	3	100	0	76	68	0	0	31	0.90
36750--36799	2	25.0	2	100	0	100	50	0	0	50	1.00
37852--37896	20	2.2	20	96	0	81	35	2	13	48	1.54
39112--39149	20	2.0	20	84	5	51	26	7	5	60	1.46
46877--46942	21	3.1	21	75	0	69	42	21	12	24	1.86
50778--50836	7	8.4	7	96	0	100	45	37	0	16	1.48
53075--53189	59	1.9	59	98	0	221	42	10	8	38	1.70
53177--53218	2	21.0	2	100	0	84	50	0	0	50	1.00
53224--53308	32	2.7	31	80	5	89	42	14	10	32	1.79
53609--53688	21	3.9	21	75	3	90	25	17	25	32	1.97
54268--54302	6	5.8	6	100	0	70	0	17	48	34	1.47
54423--54567	41	3.5	41	83	2	193	35	24	17	22	1.95
54446--54560	21	5.6	21	82	3	153	32	26	17	24	1.97
54586--54622	19	1.9	19	94	0	65	37	16	24	21	1.93
54964--55055	38	2.5	37	77	13	100	35	7	0	56	1.28
55852--55910	30	2.0	29	80	6	66	45	8	6	38	1.61
60866--60947	41	2.0	41	100	0	164	43	17	9	29	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61050--61076	12	2.2	12	100	0	54	40	7	0	51	1.30
61529--61570	18	2.3	18	91	0	66	30	30	21	16	1.95
62411--62463	20	2.7	20	96	0	97	28	15	20	35	1.93
64379--64412	17	2.0	17	88	0	50	23	8	2	64	1.36
64774--64805	16	2.0	16	93	0	55	25	21	6	46	1.74
68693--68754	32	1.9	32	84	12	83	22	12	29	35	1.91
69366--69439	32	2.3	33	76	4	80	14	8	25	51	1.70
69377--69449	32	2.3	33	78	7	78	17	8	23	50	1.73
70581--71222	322	2.0	321	95	0	1167	31	18	14	35	1.91
74435--74469	16	2.1	17	94	5	63	31	0	25	42	1.55
92733--92789	27	2.1	27	100	0	114	35	14	28	22	1.93
95157--95190	18	1.9	17	88	5	50	17	20	29	32	1.96
95713--95759	20	2.3	21	88	7	78	27	25	31	14	1.95
95768--95823	28	2.0	27	82	3	67	26	19	33	19	1.96
95840--96001	29	5.6	29	95	2	283	14	31	30	23	1.95
95840--96001	86	1.9	87	93	3	283	14	31	30	23	1.95
96308--96358	26	1.9	26	88	4	75	45	11	35	7	1.70
96575--96663	44	2.0	46	86	8	130	41	0	12	46	1.41
96696--96772	34	2.1	34	81	13	84	38	0	12	48	1.42
98992--99025	17	2.0	17	94	0	59	44	8	5	41	1.60
99231--99512	11	23.9	11	67	21	94	45	8	1	43	1.45
99231--99328	14	7.1	14	73	11	67	47	6	2	43	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99350--99448	14	8.2	13	70	20	65	41	9	2	47	1.47
99352--99512	23	6.8	23	74	10	69	43	9	1	45	1.47
99247--99533	120	2.4	118	85	9	422	46	9	1	42	1.45
102304--102362	26	2.3	24	78	16	64	40	3	8	47	1.51
102304--102415	58	2.0	57	82	8	140	41	4	7	47	1.51
102304--102371	15	4.9	14	69	16	52	41	2	8	47	1.50
103166--103219	28	1.9	28	96	0	99	57	12	0	29	1.36
103161--103226	28	2.4	28	85	10	98	56	10	0	33	1.34
103196--103243	21	2.3	21	82	7	62	54	16	0	29	1.43
103737--103828	45	2.0	46	97	2	177	22	47	10	18	1.79
103876--103966	29	3.1	29	96	0	164	18	35	30	15	1.92
107016--107351	167	2.0	168	99	0	665	37	21	13	28	1.91
114252--114293	6	7.0	6	94	0	75	16	0	47	35	1.47
116696--116747	20	2.5	21	84	3	70	38	19	23	19	1.93
116715--116870	41	3.8	42	81	6	160	33	24	19	23	1.97
116736--116850	20	5.7	20	82	6	124	31	26	19	23	1.98
116734--116870	41	3.4	40	82	6	168	33	24	18	23	1.97
117580--117633	24	2.2	24	83	0	72	24	16	20	38	1.92
117808--117832	12	2.1	12	100	0	50	72	0	28	0	0.86
120096--120160	19	3.7	19	76	19	77	43	20	24	12	1.86
120096--120222	33	3.8	33	86	4	184	42	18	25	13	1.87
120101--120229	66	2.0	66	95	0	231	42	17	24	14	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120096--120226	19	7.7	19	64	23	58	42	19	25	12	1.86
120222--120263	19	2.2	19	91	0	66	16	19	23	40	1.91
120231--120297	19	3.8	19	75	18	81	11	22	20	44	1.84
120404--120440	14	2.6	14	100	0	74	48	21	0	29	1.50
121790--121856	21	3.2	21	68	4	55	19	20	35	23	1.95
121790--121912	42	2.9	41	79	7	113	22	18	36	21	1.95
122128--122312	91	2.0	90	89	6	282	47	18	11	22	1.81
123999--124118	40	3.1	38	78	9	134	42	20	25	11	1.86
123999--124118	19	6.1	19	80	7	132	42	20	25	11	1.86
124114--124198	20	4.4	19	80	5	98	10	17	23	48	1.78
124150--124238	20	4.4	20	78	10	92	11	24	25	38	1.89
124163--124267	20	5.2	20	75	13	99	12	25	20	41	1.87
124168--124267	40	2.5	40	80	6	114	12	26	21	41	1.87
124765--124937	20	8.6	20	88	3	186	26	19	26	28	1.98
124765--124959	61	3.2	61	81	3	162	25	20	25	29	1.99
125009--125049	21	2.0	21	85	0	55	34	29	17	19	1.94
133031--133181	83	1.8	81	84	5	205	39	11	5	43	1.65
134567--134644	31	2.5	30	80	12	86	42	1	3	52	1.27
135346--135413	31	2.2	31	84	7	84	54	2	2	39	1.31
135346--135429	31	2.7	31	81	3	80	54	3	2	39	1.31
135981--136045	32	2.0	32	84	0	85	33	21	12	32	1.90
142300--142373	21	3.5	21	100	0	148	29	18	27	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
142731--142794	32	2.0	32	100	0	128	40	15	9	34	1.80
150261--150363	51	2.0	51	88	3	154	33	21	16	28	1.95
165573--165612	12	3.2	12	93	6	71	15	55	15	15	1.71
165572--165612	13	3.2	13	93	6	75	14	56	14	14	1.69
168873--168904	15	2.1	16	94	5	57	6	25	18	50	1.70
169655--169688	16	2.1	16	94	0	59	32	26	8	32	1.87
170091--170129	12	3.2	12	96	0	69	17	53	12	15	1.72
172808--172841	14	2.5	13	86	9	50	41	5	0	52	1.25
172835--172871	13	2.8	13	95	0	65	40	5	0	54	1.24
173475--173590	12	9.9	12	83	6	105	47	8	0	43	1.34
173527--173583	2	28.5	2	100	0	114	50	0	0	49	1.00
173722--173760	18	2.2	17	86	4	51	33	10	0	56	1.33
175406--175450	13	3.4	13	80	17	56	44	8	0	46	1.34
175738--175776	19	2.2	18	86	9	53	41	0	35	23	1.55
176060--176100	15	3.0	14	86	13	59	39	7	0	53	1.29
176215--176260	8	5.8	8	84	7	58	56	4	2	36	1.31
176221--176252	15	2.1	15	94	0	55	59	0	3	37	1.13
176472--176567	15	6.4	14	79	12	77	37	6	1	55	1.32
176469--176515	9	5.8	9	74	23	50	34	6	2	57	1.36
176479--176559	16	5.2	16	74	19	66	38	6	0	55	1.25
176472--176516	16	2.9	16	90	3	65	33	6	2	57	1.37
176472--176559	31	2.9	30	77	16	92	37	5	1	55	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
176510--176570	2	33.0	2	75	21	53	42	4	0	52	1.23
176470--176724	21	11.5	22	65	23	83	40	6	3	49	1.48
176469--176570	27	3.7	28	76	18	90	38	5	0	54	1.31
176514--176589	19	3.9	19	80	10	73	42	5	2	50	1.39
176478--176590	53	2.1	54	81	14	128	38	6	1	53	1.37
176556--176601	24	1.9	24	81	0	56	41	6	8	43	1.61
176660--176721	2	33.0	2	78	12	69	43	1	3	51	1.27
176731--176771	19	2.3	18	87	8	57	29	12	0	58	1.34
182594--182631	14	2.8	13	84	7	58	42	5	0	52	1.24
182594--182637	13	3.3	12	82	17	52	43	6	0	50	1.29

Tables:   1   2