genome.fa.s8609.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008609.1 Hibiscus syriacus cultivar Beakdansim tig00111565_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  282724

Tables:   1   2   

This is table  2  of  2  ( 177 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
182684--182762	40	1.9	42	85	10	110	45	0	1	53	1.08
183318--183377	2	30.5	2	89	3	95	50	1	0	48	1.11
183504--183542	18	2.2	17	86	4	51	33	10	0	56	1.33
185182--185226	13	3.4	13	80	17	56	44	8	0	46	1.34
185837--185877	15	3.0	14	86	13	59	39	7	0	53	1.29
185984--186029	8	5.8	8	84	7	58	56	4	2	36	1.31
185990--186021	15	2.1	15	94	0	55	59	0	3	37	1.13
186256--186346	16	5.8	16	76	13	73	38	6	0	54	1.26
186286--186356	2	38.0	2	78	18	73	43	4	0	52	1.20
186238--186346	31	3.5	29	74	18	87	37	6	0	55	1.32
186285--186352	25	3.0	22	78	16	75	42	4	0	52	1.21
186342--186387	24	1.9	24	81	0	56	41	6	8	43	1.61
186501--186541	19	2.3	18	87	8	57	29	12	0	58	1.34
187383--187412	2	15.0	2	100	0	60	50	0	0	50	1.00
192285--192309	13	1.9	13	100	0	50	48	0	0	52	1.00
192340--192407	21	3.2	21	77	10	75	44	0	1	54	1.09
192321--192427	42	2.6	42	82	10	123	44	0	1	53	1.11
192975--193143	2	88.5	2	80	13	196	47	2	1	47	1.24
193167--193205	18	2.2	17	86	4	51	33	10	0	56	1.33
195877--195924	22	2.1	23	88	3	71	31	8	2	58	1.39
195883--195968	16	5.5	16	77	14	74	37	6	0	55	1.27
195925--196121	2	102.5	2	68	19	100	43	6	3	46	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
196128--196168	19	2.3	18	87	8	57	29	12	0	58	1.34
206648--206685	14	2.8	13	84	7	58	42	5	0	52	1.24
206648--206691	13	3.3	12	82	17	52	43	6	0	50	1.29
207359--207412	2	27.5	2	88	3	83	50	1	0	48	1.11
207531--207569	18	2.2	17	86	4	51	33	10	0	56	1.33
209868--209900	13	2.3	15	90	10	52	39	9	0	51	1.34
209968--210013	8	5.8	8	84	7	58	56	4	2	36	1.31
209974--210005	15	2.1	15	94	0	55	59	0	3	37	1.13
210238--210274	16	2.3	16	95	0	65	32	8	0	59	1.27
210220--210327	29	3.8	28	75	13	96	37	6	0	55	1.32
210268--210330	2	34.0	2	76	20	57	42	4	0	52	1.22
210232--210367	13	10.3	13	71	21	81	38	7	2	52	1.42
215173--215222	24	2.1	24	100	0	100	38	16	12	34	1.85
216391--216431	19	2.0	20	90	9	66	48	0	0	51	1.00
220811--220835	13	1.9	13	100	0	50	64	12	0	24	1.27
230259--230295	18	2.0	19	94	5	67	48	10	8	32	1.67
252406--252472	34	1.9	33	82	14	82	46	19	13	20	1.83
260671--260713	5	8.0	5	92	5	50	0	20	41	37	1.53
260676--260715	6	7.2	6	97	2	59	0	17	45	37	1.49
262875--263167	111	2.6	110	86	3	410	33	10	11	44	1.75
263717--264006	111	2.6	111	86	3	406	31	11	10	46	1.74
262551--264698	783	2.7	763	89	4	3154	37	9	10	42	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
264438--264698	111	2.3	112	85	2	366	33	11	11	44	1.76
263748--265372	692	2.4	690	91	3	2585	36	9	10	42	1.73
265194--265454	111	2.3	112	95	0	470	30	11	11	45	1.76
265916--266287	112	3.3	112	89	3	547	31	11	11	45	1.75
264439--266393	785	2.5	785	91	2	3153	36	10	10	42	1.74
266589--266639	23	2.2	23	85	0	66	31	17	9	41	1.82
268339--269159	220	3.8	220	87	4	1155	25	14	26	33	1.94
268696--269123	209	2.0	209	91	0	696	25	13	26	35	1.93
268339--269159	429	1.9	432	88	4	1231	25	14	26	33	1.94
269537--269766	103	2.3	103	79	5	234	34	12	16	36	1.86
269834--269949	37	3.2	36	74	3	106	38	11	16	33	1.84
277722--277775	2	27.0	2	100	0	108	50	0	0	50	1.00
279401--279455	27	2.0	27	85	0	74	34	12	45	7	1.70

Tables:   1   2

The End!