genome.fa.s8617.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008617.1 Hibiscus syriacus cultivar Beakdansim tig00111575_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  526994

Tables:   1   2   

This is table  2  of  2  ( 220 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
252435--253438	105	9.6	103	77	12	703	36	23	19	21	1.95
252443--253447	42	24.2	42	89	4	775	36	23	19	21	1.95
255435--255515	27	2.9	26	69	15	72	51	2	8	37	1.46
255442--255654	30	7.3	28	70	15	146	51	1	7	39	1.40
255413--255647	58	4.0	57	83	10	287	51	2	7	38	1.43
258874--258906	3	11.0	3	93	0	57	36	0	0	63	0.95
259394--259421	4	7.0	4	100	0	56	75	0	25	0	0.81
260434--260494	28	2.2	28	84	0	77	36	1	6	55	1.36
260460--260500	20	2.1	19	90	4	64	39	4	2	53	1.35
265243--265337	32	3.0	32	87	0	127	30	10	26	32	1.90
265440--265571	36	3.7	35	79	5	138	30	17	12	39	1.87
265586--265683	36	2.7	36	81	6	101	29	17	14	38	1.89
265616--265687	36	2.0	36	88	0	108	27	19	12	40	1.88
265965--266311	134	2.6	130	83	5	392	26	32	17	23	1.97
268857--268904	20	2.3	22	85	7	64	52	2	0	45	1.12
270442--270470	2	14.5	2	100	0	58	48	0	0	51	1.00
270758--270826	33	2.1	33	97	0	129	23	11	15	49	1.77
274181--274346	34	4.6	36	75	17	143	44	5	9	40	1.60
274304--274337	13	2.5	13	90	4	50	50	2	5	41	1.42
274334--274368	2	17.5	2	100	0	70	51	0	0	48	1.00
274411--274449	20	1.9	21	84	5	53	41	2	10	46	1.51
274481--274532	12	4.8	11	82	17	65	34	0	1	63	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
274486--274532	19	2.5	19	85	0	67	34	0	2	63	1.06
277865--278066	110	1.8	112	85	2	291	32	11	10	45	1.76
278649--278715	23	2.9	23	86	0	98	37	17	5	38	1.75
278573--278802	110	2.1	110	90	1	363	33	13	10	41	1.79
280976--281034	29	2.0	29	90	0	91	23	18	20	37	1.94
286894--287081	90	2.1	90	98	2	362	44	18	10	27	1.81
288122--288246	31	4.0	31	92	2	198	38	22	19	20	1.94
292505--292643	31	4.5	31	90	1	224	40	22	19	17	1.92
292505--292643	63	2.2	62	91	2	224	40	22	19	17	1.92
298724--298759	2	18.0	2	100	0	72	50	0	0	50	1.00
298835--298897	2	31.5	2	100	0	126	49	0	0	50	1.00
302746--302788	18	2.4	18	88	7	61	60	6	32	0	1.23
303296--303357	21	3.0	20	77	13	63	53	6	11	29	1.61
305456--305581	65	1.9	65	82	6	157	32	22	15	29	1.95
305458--305597	65	2.2	65	80	7	151	33	23	15	27	1.95
315454--315505	23	2.3	23	93	3	88	25	36	21	17	1.94
315463--315527	23	3.3	19	85	10	69	23	30	30	15	1.95
317691--317748	25	2.3	25	96	0	107	31	12	10	46	1.74
328724--328761	20	1.9	19	94	5	67	21	42	23	13	1.88
332837--332997	65	2.5	65	79	6	166	31	24	17	27	1.97
337267--337312	12	3.8	12	88	0	65	43	6	6	43	1.56
337399--337442	19	2.3	19	80	4	52	40	4	2	52	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
342755--342824	25	2.8	24	78	8	77	37	17	4	41	1.69
343170--343296	30	4.2	30	82	0	155	37	15	22	25	1.93
345138--345220	30	2.8	31	83	5	100	37	30	15	16	1.90
347549--347590	20	2.2	19	86	4	57	14	26	0	59	1.35
349622--349688	30	2.2	31	83	2	82	34	26	19	19	1.96
349647--349741	31	3.1	31	76	3	102	34	21	16	27	1.95
360208--360240	3	11.0	3	100	0	66	66	0	0	33	0.92
361524--361557	2	17.0	2	100	0	68	50	0	0	50	1.00
362391--362480	44	2.1	43	93	2	153	40	11	3	45	1.56
369088--369131	21	2.1	21	91	0	70	27	20	13	38	1.90
369872--369914	17	2.6	17	81	3	52	34	34	16	13	1.88
371315--371361	22	2.2	21	81	11	51	57	23	0	19	1.41
371353--371399	15	3.1	15	93	0	76	63	27	2	6	1.30
372856--372888	12	2.6	13	90	4	50	45	6	12	36	1.66
378731--378791	19	3.1	19	82	13	79	19	36	29	14	1.92
378731--378791	21	3.0	21	86	9	74	19	36	29	14	1.92
380177--380214	3	12.7	3	91	0	58	71	2	26	0	1.00
383171--383205	14	2.5	14	90	0	52	42	25	14	17	1.86
395353--395404	21	2.5	20	90	9	86	30	23	21	25	1.99
406832--406889	20	2.8	21	77	15	66	25	31	25	17	1.97
412806--412839	2	17.5	2	93	6	61	50	0	0	50	1.00
413169--413264	3	32.7	3	93	4	169	31	0	1	67	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
413263--413298	11	3.2	11	92	4	54	2	0	27	69	1.02
423225--423272	7	7.0	7	80	20	57	75	0	12	12	1.06
423223--423268	12	3.5	13	82	11	58	73	0	13	13	1.09
423209--423289	22	3.6	23	75	17	64	71	0	16	12	1.14
423203--423291	33	2.6	31	71	22	72	70	0	16	12	1.16
423228--423281	22	2.5	22	82	14	67	74	0	12	12	1.08
427172--427212	21	2.0	21	90	0	64	31	21	12	34	1.91
433028--433059	14	2.3	14	94	0	55	31	15	21	31	1.95
437161--437192	16	2.0	16	93	0	55	46	6	21	25	1.74
441937--442403	59	7.9	59	90	0	711	27	20	12	39	1.88
441937--442403	235	2.0	236	89	2	724	27	20	12	39	1.88
442990--443031	19	2.1	21	86	8	61	26	14	11	47	1.78
447123--447170	25	1.9	25	83	8	62	20	2	6	70	1.19
447151--447184	13	2.6	13	86	13	52	11	0	14	73	1.10
457318--457394	32	2.4	32	86	2	120	23	22	25	28	1.99
457629--457701	31	2.4	30	84	11	87	15	26	31	27	1.95
462626--462691	30	2.3	30	78	5	73	15	28	28	27	1.96
464621--464747	35	3.6	35	74	13	118	24	18	21	35	1.96
468667--468712	21	2.2	21	84	0	56	28	15	23	32	1.95
468675--468722	21	2.3	21	85	0	60	22	16	20	39	1.92
469200--469256	30	1.9	29	82	10	71	35	5	15	43	1.70
472218--472255	2	19.5	2	89	5	60	50	2	0	47	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
472620--472654	2	18.0	2	88	5	54	48	0	2	48	1.16
477860--477900	21	1.9	22	90	5	66	21	17	19	41	1.90
492482--492554	22	3.2	21	68	21	58	42	6	17	32	1.76
492474--492578	46	2.3	46	93	1	176	43	6	17	32	1.75
492756--492820	17	3.6	17	72	22	60	20	24	30	24	1.98
492727--492822	38	2.5	38	93	0	165	25	23	28	22	2.00
492735--492803	21	3.5	21	70	22	67	24	27	26	21	1.99
506094--506149	25	2.2	24	84	9	67	60	1	0	37	1.07
506101--506166	32	2.1	32	82	5	80	59	3	0	37	1.13
513001--513080	41	2.0	41	92	2	135	53	3	10	32	1.52
523270--523311	21	2.0	21	100	0	84	47	0	0	52	1.00
524227--524308	30	2.7	30	77	11	85	35	0	1	63	1.02

Tables:   1   2

The End!