genome.fa.s8619.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008619.1 Hibiscus syriacus cultivar Beakdansim tig00111579_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35395

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
716--800	33	2.6	33	86	1	109	17	28	34	20	1.95
749--938	101	1.9	104	91	3	314	17	32	33	15	1.92
649--1041	135	2.9	130	76	14	413	16	33	32	17	1.92
989--1071	34	2.5	33	84	3	105	15	28	36	19	1.93
851--1372	168	3.1	168	86	5	702	17	31	32	19	1.95
9669--9889	32	6.6	32	73	16	144	16	30	35	17	1.92
9669--9891	33	6.6	33	74	13	186	16	30	35	17	1.92
9706--9921	65	3.2	64	71	19	213	18	30	36	15	1.91
9646--9934	138	2.1	138	96	0	542	18	32	33	15	1.92
9785--10196	168	2.4	170	91	1	650	16	32	33	17	1.93
9975--10059	33	2.6	33	92	1	136	15	28	35	21	1.93
10007--10331	137	2.4	136	93	1	562	16	32	33	17	1.93
9606--11153	306	5.1	306	92	3	2367	17	32	32	17	1.93
10144--10499	168	2.1	168	91	2	572	17	32	32	18	1.94
10283--10364	33	2.5	33	90	2	121	15	29	34	20	1.94
10312--10635	136	2.4	137	92	1	546	17	31	32	18	1.94
10147--10540	168	2.3	168	87	3	508	17	32	31	17	1.93
10447--10805	169	2.1	170	95	0	639	16	31	33	18	1.93
10584--10668	33	2.6	33	92	1	136	15	28	35	21	1.93
10616--10941	137	2.4	137	95	0	591	16	31	33	18	1.93
10753--11110	169	2.1	170	94	1	621	16	32	32	18	1.93
10893--10974	33	2.5	33	88	2	112	17	30	34	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14196--14229	17	2.0	17	100	0	68	11	58	29	0	1.33
24462--24494	11	3.0	11	90	0	57	15	36	39	9	1.79
24881--25101	32	6.6	32	75	15	160	16	30	36	17	1.92
24881--25103	33	6.6	33	76	13	204	16	30	36	17	1.91
24858--25145	138	2.1	137	97	0	549	18	32	34	15	1.92
24997--25575	168	3.4	169	95	1	1038	16	32	33	17	1.92
25187--25271	33	2.6	33	90	1	127	15	29	35	20	1.93
25356--25437	33	2.6	32	84	5	103	17	28	34	20	1.95
24815--25406	306	1.9	305	88	5	824	16	32	34	16	1.92
31977--32152	74	2.3	76	83	3	221	22	22	31	23	1.99

Tables:   1

The End!