genome.fa.s8622.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008622.1 Hibiscus syriacus cultivar Beakdansim tig00111585_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124094

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--11485	7	1700.4	7	90	8	13227	37	43	5	14	1.68
85--175	20	5.0	16	89	9	67	37	48	0	14	1.44
6899--6926	9	3.1	9	100	0	56	35	32	21	10	1.88
11454--13769	7	343.3	7	92	6	3677	29	55	15	0	1.42
14139--14179	20	2.0	20	90	0	64	58	17	12	12	1.63
14202--14262	14	4.0	14	75	19	59	45	22	21	9	1.81
14652--14732	22	3.8	22	75	6	69	25	12	38	23	1.90
14877--14972	41	2.3	41	81	0	102	27	16	21	34	1.95
14907--14992	20	4.2	20	79	8	93	25	16	26	31	1.96
15099--15135	19	1.9	19	94	0	65	21	16	29	32	1.95
20832--20862	11	2.8	11	100	0	62	58	16	9	16	1.63
24472--24683	108	2.0	108	94	0	370	37	16	20	24	1.93
26373--26417	20	2.2	20	96	0	81	35	13	24	26	1.92
30210--30263	3	18.7	3	83	7	58	37	5	0	57	1.22
30295--30332	15	2.5	15	100	0	76	34	39	26	0	1.57
31926--31971	22	2.1	22	100	0	92	34	8	17	39	1.80
38972--39366	198	2.0	193	96	3	722	31	26	12	30	1.93
41464--41575	42	2.7	42	76	5	111	23	17	38	20	1.93
42058--42143	20	4.3	20	89	0	100	37	23	18	20	1.94
42188--42341	20	8.4	20	75	18	120	17	18	22	41	1.90
42156--42321	87	1.9	87	89	0	260	16	19	21	42	1.89
44225--44292	19	3.5	19	78	4	73	44	22	17	16	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44172--44279	20	5.8	19	72	15	91	40	24	18	16	1.90
44628--44693	22	3.0	22	88	0	96	22	15	37	24	1.92
44891--44963	20	3.7	20	92	0	119	21	19	20	38	1.94
44960--45005	21	2.2	21	84	7	58	41	17	21	19	1.90
54129--54206	39	2.0	39	82	5	95	29	28	25	16	1.97
54283--54339	21	2.8	21	76	10	55	63	3	17	15	1.45
61689--62358	105	6.4	105	93	1	1080	32	26	18	21	1.97
63912--63950	19	2.0	20	85	5	53	30	5	0	64	1.15
70461--70586	46	2.8	45	91	3	200	38	7	23	30	1.82
73811--73899	31	2.9	31	84	0	115	35	15	15	32	1.90
75245--75483	119	2.0	119	95	1	435	35	15	25	23	1.94
76080--76105	2	13.0	2	100	0	52	50	0	0	50	1.00
77547--77666	36	3.4	35	89	5	188	20	22	20	35	1.96
82508--82544	14	2.6	14	100	0	74	21	8	32	37	1.83
83514--83609	44	2.2	43	88	5	140	32	4	19	43	1.70
83618--83749	66	2.0	67	95	1	239	30	15	15	38	1.89
92952--93035	33	2.7	30	78	10	96	3	28	14	53	1.57
95563--95642	29	2.7	30	92	3	126	41	20	17	21	1.91
95817--95860	22	2.0	23	90	4	72	34	18	0	47	1.49
105747--105787	19	2.2	19	100	0	82	58	4	31	4	1.40
107314--107528	6	35.8	6	95	0	313	10	17	49	22	1.77
113366--113414	5	9.8	5	88	0	62	4	38	36	20	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113412--113490	6	13.2	6	89	0	104	6	16	46	30	1.72
119363--119406	5	8.8	5	89	0	61	4	38	38	18	1.71
119404--119536	6	22.2	6	92	0	194	4	16	48	30	1.66

Tables:   1

The End!