genome.fa.s8628.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008628.1 Hibiscus syriacus cultivar Beakdansim tig00111596_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  236829

Tables:   1   

This is table  1  of  1  ( 99 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1117--1178	27	2.4	26	81	10	65	41	3	1	53	1.27
2802--2826	7	3.6	7	100	0	50	28	0	32	40	1.57
3586--3626	20	2.1	20	86	4	57	36	0	4	58	1.20
23388--23424	18	2.1	18	89	0	56	29	16	16	37	1.90
26803--26918	45	2.6	45	93	4	191	41	8	18	31	1.81
26840--26913	25	3.2	25	63	29	63	43	6	17	32	1.75
28710--28753	19	2.3	19	96	0	79	29	13	31	25	1.94
29132--29396	54	4.9	53	84	3	289	33	19	19	27	1.96
29124--29431	54	5.7	55	78	11	237	33	19	18	28	1.96
37464--37737	54	5.1	53	86	1	287	32	19	19	28	1.96
37456--37737	108	2.6	106	81	5	316	32	19	19	28	1.96
63039--63105	23	3.0	23	91	2	100	28	20	23	26	1.99
67664--67772	23	4.7	23	90	0	155	27	22	22	26	1.99
68029--68081	27	2.0	27	85	14	74	35	1	11	50	1.49
70229--70275	20	2.3	20	89	7	69	44	12	2	40	1.54
72071--72169	32	3.1	32	76	0	99	34	7	14	44	1.72
74907--74942	18	2.0	18	100	0	72	27	11	16	44	1.82
76839--76894	22	2.4	23	70	24	55	75	0	3	21	0.96
79354--79427	19	3.7	19	75	21	64	72	0	4	22	1.01
79354--79428	5	14.8	5	81	15	75	73	0	4	22	1.00
82328--82384	26	2.2	26	78	6	62	71	0	5	22	1.05
84184--84276	27	3.6	27	81	10	104	55	0	3	40	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84208--84276	25	2.7	26	80	19	90	55	0	2	42	1.15
84540--84650	39	2.9	38	76	11	118	41	2	18	37	1.64
85044--85121	31	2.5	31	91	0	120	47	14	10	28	1.76
87822--87875	22	2.5	22	90	0	90	29	18	22	29	1.97
87977--88047	34	2.1	34	100	0	142	43	4	18	33	1.69
90555--90647	32	2.9	32	85	0	123	34	16	17	32	1.92
91511--91600	32	2.8	32	77	0	99	34	16	18	30	1.94
93545--93603	19	3.3	19	71	23	56	59	0	0	40	0.97
95487--96269	113	7.0	113	92	1	1148	28	18	15	37	1.92
97202--97587	83	4.7	83	94	0	655	38	21	12	27	1.89
98726--98799	18	3.8	18	83	13	85	0	17	1	81	0.77
98727--98810	10	8.0	11	77	17	90	0	17	1	80	0.77
98726--98810	21	4.2	20	82	11	93	0	18	1	80	0.79
98742--98810	19	3.4	19	82	17	77	0	20	0	79	0.73
98750--98799	9	5.4	9	79	13	57	0	18	0	82	0.68
98726--98810	41	2.1	43	84	8	115	0	18	1	80	0.79
106002--106033	15	2.1	15	94	0	55	46	9	18	25	1.79
111451--111532	3	26.7	3	85	4	110	60	0	0	39	0.96
111814--111869	18	3.1	18	75	10	69	57	0	0	42	0.99
113690--113748	31	1.9	31	82	0	73	40	5	20	33	1.74
116192--116247	26	2.2	26	93	0	94	25	12	28	33	1.92
116198--116254	26	2.2	26	90	0	87	24	15	29	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126786--126827	17	2.4	18	84	11	52	76	0	7	16	1.00
133529--134466	54	17.4	54	86	2	1221	33	20	18	28	1.96
133706--133837	27	4.9	28	61	25	68	34	25	15	25	1.95
143515--143563	18	2.7	18	90	0	80	24	16	18	40	1.90
143857--144009	77	2.0	79	82	7	188	43	3	9	43	1.52
144263--144332	35	2.0	35	91	0	113	12	28	10	48	1.74
145012--145044	2	16.5	2	100	0	66	51	0	0	48	1.00
148176--148206	15	2.0	16	93	6	55	51	0	9	38	1.35
148432--148830	54	7.4	54	80	3	435	34	17	18	29	1.94
148840--148936	49	2.0	49	87	0	140	28	15	27	27	1.96
148851--148954	49	2.1	49	81	0	118	31	15	25	27	1.95
153783--153925	40	3.6	40	83	4	175	28	27	19	23	1.98
160043--160081	20	2.0	20	84	0	51	33	25	10	30	1.89
167968--168006	20	2.0	20	84	0	51	33	25	10	30	1.89
169979--170134	40	4.0	40	89	4	228	33	25	16	25	1.96
173156--173206	23	2.2	23	100	0	102	27	19	9	43	1.82
176971--177085	24	4.8	24	90	4	169	23	15	20	40	1.90
176974--177102	24	5.4	24	87	3	134	24	13	20	41	1.88
181343--181380	18	2.1	18	95	0	67	21	18	26	34	1.96
184220--184378	37	4.4	37	77	13	159	42	2	10	44	1.51
184274--184392	37	3.2	36	71	11	89	45	2	8	43	1.47
184459--184498	12	3.2	12	86	13	55	25	0	2	72	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
185609--185648	20	2.0	20	85	4	55	20	2	2	75	1.04
200360--200653	149	2.0	148	95	0	525	34	7	9	47	1.65
201841--201950	37	3.0	37	77	2	114	36	40	4	19	1.72
208088--208170	40	2.1	40	95	0	148	24	20	15	39	1.91
214845--214875	15	2.1	15	100	0	62	45	12	0	41	1.42
217133--217247	31	3.7	31	77	10	101	40	8	2	48	1.48
217295--217361	33	2.1	32	86	5	91	55	0	1	43	1.09
217273--217357	40	2.1	40	83	12	104	58	0	2	38	1.11
221750--221918	54	3.1	55	87	4	234	35	12	20	31	1.90
222190--222669	81	5.9	82	82	6	514	36	11	22	29	1.89
227250--227397	53	2.7	55	86	9	205	35	12	20	31	1.90
227690--228113	81	5.3	80	83	6	486	32	12	26	28	1.92
227690--228272	162	3.7	158	79	12	566	34	11	25	28	1.91
228127--228281	85	1.9	79	83	10	195	40	10	21	27	1.86
231346--231386	8	5.1	8	87	0	64	39	21	21	17	1.93
232223--232265	20	2.2	20	100	0	86	34	27	13	23	1.93
232265--232359	20	4.7	20	71	8	66	34	23	20	22	1.96
232326--232515	20	9.6	20	80	7	210	34	26	20	18	1.96
232364--232515	59	2.6	58	87	3	180	32	26	20	21	1.97
232661--232714	22	2.5	22	78	3	65	24	38	16	20	1.92
232893--232963	33	2.2	33	94	0	124	11	23	16	47	1.79
233084--233138	14	3.6	14	73	21	56	40	23	27	9	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
233084--233154	33	2.2	33	92	0	115	42	25	23	8	1.82
233150--233247	19	5.7	19	70	22	81	10	24	22	42	1.84
233172--233260	14	5.7	14	73	24	72	8	25	23	41	1.83
233155--233268	33	3.5	33	93	1	203	9	24	21	44	1.82
234942--235311	90	4.1	93	92	7	647	21	12	19	46	1.83
235355--235483	19	7.3	19	75	17	125	45	28	17	8	1.77
235391--235483	33	2.8	32	91	4	150	46	27	18	7	1.76
235355--235483	52	2.5	52	74	14	140	45	28	17	8	1.77
235500--235556	14	3.7	14	77	20	60	10	21	22	45	1.82
235484--235575	33	2.8	33	93	1	159	10	20	21	46	1.81
235479--235612	19	7.6	19	76	16	119	11	19	23	45	1.82

Tables:   1

The End!