genome.fa.s8640.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008640.1 Hibiscus syriacus cultivar Beakdansim tig00111616_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  250914

Tables:   1   2   

This is table  1  of  2  ( 167 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7824--7863	18	2.3	18	87	12	57	57	0	5	37	1.21
7916--7947	16	1.9	17	93	6	57	34	0	0	65	0.93
11555--12049	2	265.0	2	69	26	308	52	4	0	42	1.27
11536--12049	132	3.7	138	76	18	441	52	4	0	42	1.27
12346--12529	65	2.9	63	79	8	194	29	23	19	27	1.98
16059--16131	23	3.3	23	82	3	87	34	23	17	24	1.96
16147--16497	121	2.9	121	97	0	648	36	24	13	25	1.92
16359--16394	18	2.0	18	94	0	63	36	33	19	11	1.87
17701--17859	63	2.5	63	87	2	212	26	22	19	32	1.97
17827--17864	19	2.0	20	94	5	69	26	28	15	28	1.96
24313--24496	65	2.9	64	80	8	205	29	23	20	26	1.99
33748--33930	17	10.1	18	69	18	96	61	1	0	36	1.07
33768--33942	24	6.9	24	70	19	106	60	1	0	38	1.09
33794--34116	2	173.5	2	67	26	126	54	4	0	40	1.24
33751--34121	29	13.8	27	66	23	110	56	4	0	39	1.21
33752--34119	5	73.2	5	68	23	156	56	4	0	39	1.22
33796--33938	53	2.7	54	74	18	147	59	0	0	39	1.08
33795--34099	68	4.5	65	75	14	228	54	4	0	40	1.25
33752--34121	7	51.7	7	69	22	152	56	4	0	39	1.22
34214--34253	21	1.9	21	100	0	80	47	10	0	42	1.37
34528--34991	113	4.1	112	92	0	741	45	14	15	25	1.83
34863--35555	182	3.8	181	91	1	1111	43	13	16	27	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34863--35701	364	2.2	368	90	4	1303	43	13	16	27	1.85
35521--35575	20	2.8	20	94	0	92	32	12	12	41	1.81
38179--38233	21	2.6	21	97	0	101	36	16	18	29	1.92
39832--39892	19	3.2	19	97	0	113	22	34	19	22	1.97
42029--42078	23	2.2	23	82	13	59	58	2	4	36	1.29
42074--42117	22	2.0	22	81	0	52	52	2	0	45	1.13
42231--42290	23	2.6	23	89	0	93	51	3	3	41	1.35
42198--42296	23	4.9	19	69	26	62	54	4	2	39	1.31
43505--43560	2	28.0	2	100	0	112	50	0	0	50	1.00
43617--43947	54	6.1	54	86	3	254	34	22	16	27	1.95
43663--43947	108	2.6	108	90	4	441	35	22	16	25	1.95
44287--44340	19	2.6	22	77	8	60	29	18	18	33	1.95
44364--44414	20	2.5	21	78	18	63	19	27	17	35	1.94
50351--50571	54	4.1	54	85	4	313	32	20	18	28	1.96
50351--50571	106	2.1	107	87	3	311	32	20	18	28	1.96
51725--51763	4	9.8	4	100	0	78	48	0	0	51	1.00
52331--52543	104	2.0	105	89	6	326	49	10	7	33	1.64
53568--53614	3	15.7	3	86	0	67	59	0	4	36	1.17
53826--53860	15	2.3	15	100	0	70	34	11	37	17	1.85
53940--54097	82	1.9	82	83	5	203	26	17	27	27	1.98
54624--54914	105	2.7	105	85	8	356	24	23	15	36	1.94
54880--55129	136	1.8	136	85	0	356	28	20	16	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55407--55597	75	2.6	73	82	5	242	37	14	19	28	1.91
55519--55607	36	2.5	36	83	5	101	40	15	19	24	1.90
55588--55633	23	2.0	23	83	8	58	41	17	10	30	1.84
55598--55932	40	8.4	40	93	1	557	41	11	16	31	1.83
64559--64767	110	1.9	113	90	3	343	51	9	6	32	1.60
65917--65968	20	2.6	20	90	0	77	17	28	19	34	1.94
77855--77927	33	2.2	33	87	0	110	21	27	21	28	1.99
77863--77939	33	2.3	33	86	0	109	22	28	22	27	1.99
78553--78589	19	1.9	19	94	0	65	32	29	16	21	1.95
78680--78732	20	2.7	20	93	0	88	41	18	18	20	1.91
78745--78786	20	2.1	20	95	0	75	26	28	21	23	1.99
78956--79028	22	3.3	21	75	9	74	17	38	16	27	1.91
79413--79480	20	3.5	20	85	2	84	19	20	25	35	1.96
79448--79503	20	2.8	20	88	0	76	14	16	19	50	1.79
79467--79510	20	2.2	20	87	0	61	13	13	18	54	1.71
79648--79712	25	2.6	25	97	0	121	20	10	18	50	1.76
81342--81403	31	2.0	31	87	9	90	22	8	17	51	1.71
81522--81674	20	8.3	19	65	21	67	38	22	19	19	1.93
81533--81674	74	1.9	73	91	1	230	38	21	19	20	1.93
81691--81771	33	2.4	34	89	2	119	16	19	22	41	1.89
81743--81791	20	2.5	20	89	0	71	22	18	22	36	1.95
81778--81820	19	2.2	20	95	4	79	11	11	23	53	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82296--82407	42	2.7	42	77	0	107	21	36	18	23	1.95
82296--82403	21	5.1	21	70	4	83	21	35	19	24	1.96
83765--83830	30	2.2	30	97	0	123	30	3	12	54	1.52
83979--84162	20	9.9	20	76	13	169	23	20	21	34	1.96
83936--84081	73	2.0	73	90	2	231	22	20	21	34	1.96
83999--84154	54	2.9	54	89	0	224	21	20	21	35	1.96
86413--86466	24	2.2	24	93	0	90	40	20	18	20	1.91
87320--87435	21	5.6	21	73	11	114	21	20	26	31	1.98
87287--87414	20	6.3	20	72	10	107	24	18	27	29	1.98
87303--87435	41	3.2	41	90	4	205	22	20	27	29	1.98
92722--92749	2	14.0	2	100	0	56	50	0	0	50	1.00
109282--109649	182	2.0	178	90	4	585	41	15	16	26	1.88
111389--111449	23	2.7	23	86	0	77	36	16	4	42	1.70
111477--111524	23	2.1	23	92	0	78	33	20	8	37	1.83
113793--113825	3	11.0	3	93	0	57	69	0	0	30	0.88
113794--113843	12	4.2	12	82	12	59	74	0	4	22	0.99
114616--114670	19	2.9	18	76	10	65	30	16	30	21	1.95
114645--114713	24	3.0	24	76	17	67	31	17	26	24	1.97
127788--127847	2	30.0	2	100	0	120	50	0	0	50	1.00
129402--129471	3	24.0	3	82	2	54	57	0	0	42	0.99
129402--129461	12	5.2	12	78	11	63	53	0	0	46	1.00
132150--132206	20	2.8	20	97	0	105	38	10	26	24	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132363--132438	39	2.0	37	82	7	91	47	3	1	47	1.29
132854--132924	31	2.3	32	85	7	101	29	7	14	49	1.69
141017--141074	21	2.7	22	76	10	66	62	6	17	13	1.52
141088--141131	22	2.0	22	86	8	63	40	2	31	25	1.68
141740--141766	3	9.0	3	100	0	54	0	33	0	66	0.92
142269--142312	18	2.6	17	79	10	54	27	2	2	68	1.14
153915--153970	29	1.9	29	92	0	94	25	41	23	10	1.86
154286--154369	29	2.9	28	92	3	132	23	29	30	15	1.95
154444--154479	11	3.2	11	84	7	54	22	22	19	36	1.95
154782--154845	27	2.3	29	76	15	73	35	1	15	46	1.56
154901--154954	27	2.0	27	86	13	76	42	0	9	48	1.35
154955--155009	18	3.4	18	65	31	52	38	0	9	52	1.33
154948--155008	29	2.1	30	90	3	97	37	0	6	55	1.26
155280--155341	30	2.1	30	90	6	99	38	1	11	48	1.49
154811--155716	364	2.5	363	89	7	1342	39	1	12	46	1.51
155642--155703	30	2.1	30	90	6	99	38	1	11	48	1.49
155677--155722	22	2.1	22	95	0	83	47	2	13	36	1.54
157183--157231	25	2.0	25	91	0	80	48	16	0	34	1.46
157184--157232	14	3.7	14	73	15	50	51	16	0	32	1.45
157183--157241	25	2.6	22	84	10	66	50	13	0	35	1.42
157203--157289	22	3.8	22	70	18	70	50	9	0	40	1.34
157203--157551	60	6.5	50	77	20	341	46	12	0	40	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
157252--157606	60	6.1	59	89	9	561	46	12	0	40	1.42
157361--157387	10	2.7	10	100	0	54	40	18	0	40	1.51
157367--157447	24	3.3	24	65	3	72	45	14	0	39	1.45
157373--157465	49	2.0	43	100	0	123	47	12	0	39	1.42
157199--157605	168	2.4	168	95	2	719	46	12	0	40	1.42
160672--160728	24	2.3	26	85	14	93	56	14	0	29	1.39
161566--161609	23	1.9	23	100	0	88	31	27	11	29	1.91
163786--163822	2	19.0	2	94	5	67	51	0	0	48	1.00
168240--168276	19	1.9	19	88	0	56	29	8	24	37	1.84
168293--168339	19	2.5	20	89	6	71	38	10	12	38	1.78

Tables:   1   2