genome.fa.s8640.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008640.1 Hibiscus syriacus cultivar Beakdansim tig00111616_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  250914

Tables:   1   2   

This is table  2  of  2  ( 167 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
168333--168562	16	14.8	16	82	6	62	44	17	6	31	1.74
168345--168428	26	3.1	28	85	10	95	36	4	15	42	1.68
168429--168570	4	35.5	4	98	0	275	50	26	0	23	1.50
168432--168817	12	32.5	12	81	4	113	43	36	5	13	1.68
168571--168713	6	22.8	6	81	13	119	32	49	15	2	1.59
168577--168729	14	11.4	14	81	8	129	33	49	13	3	1.59
168560--168729	20	8.5	20	82	0	133	35	48	12	3	1.59
168611--168814	6	34.0	6	81	0	129	43	41	5	8	1.60
168677--168817	26	5.7	25	77	12	114	48	38	0	12	1.47
168444--168814	20	18.6	20	82	3	122	43	37	6	12	1.68
168818--169008	62	3.1	61	77	6	152	34	16	4	44	1.68
173592--173689	32	3.1	32	84	8	128	27	18	16	37	1.92
182138--182217	40	2.0	40	87	4	117	41	17	12	28	1.86
183039--183110	35	2.1	35	94	5	128	37	12	20	29	1.90
186300--186329	13	2.3	13	94	0	51	20	43	23	13	1.86
188775--188886	24	4.7	24	84	4	145	24	16	19	40	1.91
188772--188896	24	5.2	24	81	5	69	24	15	19	41	1.89
194918--194946	13	2.3	13	94	5	51	34	0	0	65	0.93
196995--197076	26	3.2	26	67	16	71	23	3	29	43	1.70
196969--197081	51	2.2	51	96	0	217	23	2	30	43	1.67
198485--198582	49	2.0	49	94	3	173	56	10	9	24	1.62
199326--199388	2	32.0	2	96	3	119	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
200095--200138	3	14.7	3	100	0	88	65	0	0	34	0.93
202751--202780	2	15.0	2	100	0	60	50	0	0	50	1.00
202919--202985	29	2.3	29	77	10	73	49	5	5	38	1.52
204650--204835	48	3.9	47	81	8	193	29	14	25	30	1.95
204650--204835	95	2.0	95	82	8	227	29	14	25	30	1.95
204673--204879	95	2.2	96	81	7	235	31	14	24	29	1.94
204673--204879	48	4.3	48	84	4	215	31	14	24	29	1.94
204790--205011	113	2.0	112	93	0	381	30	17	24	27	1.97
206144--206183	17	2.4	17	83	4	55	10	7	2	80	1.00
214831--214897	29	2.3	29	77	10	73	49	5	5	38	1.52
216405--216443	3	12.7	3	94	5	69	64	0	0	35	0.94
223243--223290	21	2.2	22	88	3	71	25	16	25	33	1.96
227804--227852	21	2.3	21	85	3	62	26	12	26	34	1.92
231854--231897	14	3.1	14	96	0	79	38	0	61	0	0.96
232453--232500	22	2.1	23	96	3	89	41	0	8	50	1.33
234274--234583	5	61.8	5	94	4	538	40	0	0	59	0.98
237376--237516	62	2.3	62	94	0	246	20	18	20	40	1.92
237376--237531	31	5.0	31	86	7	210	21	17	21	39	1.92
238239--238272	11	3.1	11	86	0	50	26	14	23	35	1.94
238262--238301	21	1.9	21	90	10	64	25	20	25	30	1.99
241068--241116	20	2.5	20	93	0	80	38	18	14	28	1.90
241693--241816	62	2.0	62	88	3	187	20	18	20	40	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
241693--241802	31	3.5	31	93	0	184	20	19	20	40	1.91
246862--246901	21	1.9	21	89	0	62	10	25	40	25	1.86
246883--246945	21	2.9	21	83	4	81	20	25	33	20	1.97

Tables:   1   2

The End!