genome.fa.s8641.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008641.1 Hibiscus syriacus cultivar Beakdansim tig00111617_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  241015

Tables:   1   2   

This is table  2  of  2  ( 180 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153525--153559	17	2.1	16	89	5	52	42	2	0	54	1.15
153692--153717	4	6.5	4	100	0	52	26	23	23	26	2.00
153715--154722	4	255.0	4	97	2	1932	49	25	0	25	1.50
154748--154793	11	4.5	11	74	20	55	43	0	6	50	1.28
154749--154782	18	1.9	18	94	5	61	47	0	5	47	1.26
157867--157921	28	1.9	29	81	3	67	32	0	12	54	1.38
160284--160388	32	3.3	32	72	5	95	40	16	10	33	1.82
163625--163670	23	2.0	24	82	4	58	15	26	2	56	1.50
165369--165521	32	4.8	32	76	3	137	37	15	19	26	1.92
165363--165482	64	1.9	64	89	0	186	36	14	19	30	1.91
169209--170791	168	9.5	168	86	4	2156	34	17	11	36	1.86
170816--170943	3	42.7	3	93	0	211	34	3	0	62	1.11
171832--171864	17	1.9	17	93	0	57	84	0	15	0	0.61
172366--172410	22	2.2	20	84	8	54	37	2	4	55	1.32
173138--173174	15	2.7	15	88	12	53	24	5	8	62	1.44
183703--183768	15	4.5	15	80	16	77	78	1	19	0	0.82
183706--183767	19	3.5	18	81	16	67	80	1	17	0	0.79
184699--185195	50	9.8	50	94	1	805	25	14	22	37	1.92
185238--185439	50	4.0	50	98	0	386	25	13	22	38	1.91
185055--185705	183	3.6	183	79	9	858	26	14	21	37	1.92
185005--185561	233	2.4	233	98	0	1078	26	14	21	37	1.92
185338--185777	133	3.3	133	98	0	853	27	13	21	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
185604--185705	50	2.0	50	96	0	186	25	13	22	38	1.91
186414--186960	113	4.8	112	94	2	936	37	14	19	28	1.91
187210--187329	3	39.7	3	93	1	195	34	3	0	62	1.12
188214--188246	17	1.9	17	93	0	57	84	0	15	0	0.61
188745--188789	22	2.2	20	84	8	54	37	2	4	55	1.32
189369--189707	169	2.0	172	89	3	524	34	15	13	36	1.87
190809--190912	29	3.5	28	76	17	95	39	19	21	20	1.93
206334--206389	21	2.7	21	94	0	103	23	25	14	37	1.92
206589--206626	16	2.5	15	84	12	51	28	5	0	65	1.14
209580--209615	18	2.0	18	94	0	63	55	25	2	16	1.55
209894--209974	20	4.1	20	78	0	81	19	18	24	37	1.94
210037--210183	64	2.3	64	91	1	233	52	18	2	27	1.56
210166--210198	13	2.4	14	90	5	50	48	18	3	30	1.63
211543--211670	21	6.1	21	74	7	64	29	14	31	24	1.95
211537--211616	42	1.9	42	81	0	97	23	13	35	27	1.93
212075--212124	21	2.4	21	79	0	55	32	34	14	20	1.92
213789--213858	27	2.6	27	93	2	113	47	22	15	14	1.82
214215--214272	22	2.7	21	86	5	55	24	13	43	18	1.87
214222--214272	22	2.3	22	93	0	84	21	15	43	19	1.88
214383--214420	20	2.0	20	89	5	60	47	13	13	26	1.79
214427--214472	20	2.3	20	100	0	92	15	15	26	43	1.85
214480--214530	20	2.5	21	78	9	61	25	13	27	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
215729--215763	3	11.7	3	100	0	70	31	0	0	68	0.90
216893--216931	13	3.0	13	88	0	51	25	20	17	35	1.95
217417--217637	85	2.6	86	84	5	279	30	20	16	32	1.95
217412--217674	85	3.1	83	77	7	251	31	20	17	30	1.96
217694--217752	2	29.5	2	92	0	100	49	3	0	47	1.18
220704--220728	2	12.5	2	100	0	50	48	0	0	52	1.00
224074--224128	15	3.6	15	92	2	83	7	21	12	58	1.59
234699--234785	29	3.0	29	87	0	129	17	39	27	16	1.90
234794--234875	10	8.3	10	75	17	59	23	50	17	9	1.75
235541--235584	21	2.1	21	91	0	70	29	0	15	54	1.42
238679--239096	60	7.2	59	87	9	562	40	0	12	46	1.44
238676--239096	119	3.6	118	88	8	602	40	0	13	46	1.45
238676--239096	179	2.4	170	90	6	645	40	0	13	46	1.45
238979--239092	48	2.4	48	92	4	185	40	0	11	48	1.39
239064--239111	14	3.6	14	81	16	66	35	0	16	47	1.47
240104--240156	23	2.4	21	75	9	52	56	1	1	39	1.21

Tables:   1   2

The End!