genome.fa.s8642.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008642.1 Hibiscus syriacus cultivar Beakdansim tig00111618_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  212011

Tables:   1   2   

This is table  1  of  2  ( 176 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124--179	21	2.7	21	94	0	103	23	25	14	37	1.92
376--413	16	2.4	16	86	4	51	28	5	0	65	1.14
3332--3367	18	2.0	18	94	0	63	55	25	2	16	1.55
3646--3726	20	4.1	20	78	0	81	19	18	24	37	1.94
3789--3883	27	3.2	27	70	20	73	54	17	2	25	1.54
3789--3934	63	2.3	64	90	2	224	52	18	2	27	1.57
3917--3949	13	2.4	14	90	5	50	48	18	3	30	1.63
5270--5397	21	6.1	21	74	7	64	29	14	31	24	1.95
5264--5343	42	1.9	42	81	0	97	23	13	35	27	1.93
5796--5845	21	2.4	21	79	0	55	32	34	14	20	1.92
7487--7556	27	2.6	27	93	2	113	47	22	15	14	1.82
7912--7968	22	2.7	21	84	7	62	24	14	42	19	1.88
7919--7968	22	2.3	22	89	3	75	22	16	42	20	1.89
8079--8116	20	2.0	20	89	5	60	47	13	13	26	1.79
8123--8168	20	2.3	20	100	0	92	15	15	26	43	1.85
8176--8226	20	2.5	21	78	9	61	25	13	27	33	1.94
9410--9453	3	14.7	3	95	0	79	29	0	0	70	0.88
10572--10610	13	3.0	13	88	0	51	25	20	17	35	1.95
11082--11306	84	2.6	85	83	6	269	30	20	17	32	1.95
11082--11342	84	3.1	81	78	7	245	31	20	17	30	1.96
11362--11418	2	28.5	2	92	0	96	49	3	0	47	1.18
17715--17769	15	3.6	15	92	2	83	7	21	12	58	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28327--28413	29	3.0	29	87	0	129	17	39	27	16	1.90
28422--28503	10	8.3	10	75	17	59	23	50	17	9	1.75
29170--29213	21	2.1	21	91	0	70	29	0	15	54	1.42
32310--32729	60	7.2	59	87	8	571	40	0	12	46	1.44
32488--32656	35	5.4	35	60	28	92	40	0	12	46	1.46
32307--32729	180	2.4	171	90	6	658	40	0	13	46	1.45
32676--32745	25	3.1	22	79	16	63	38	0	11	50	1.39
32611--32725	48	2.3	49	92	2	187	40	0	11	47	1.39
32697--32744	14	3.6	14	81	16	66	35	0	16	47	1.47
35299--35338	21	1.9	21	100	0	80	57	15	0	27	1.38
35367--35421	18	3.4	18	65	31	52	52	9	0	38	1.33
35441--35512	38	2.0	37	86	13	105	48	9	0	41	1.36
35537--35601	28	2.3	29	82	10	82	46	15	1	36	1.55
35683--35720	9	4.2	9	83	10	51	65	2	0	31	1.06
35890--35925	11	3.2	11	84	7	54	36	19	22	22	1.95
36191--36238	10	4.8	10	76	19	55	8	16	52	22	1.71
36170--36238	30	2.3	30	97	0	129	11	15	49	23	1.77
36255--36341	29	3.0	29	82	0	111	16	29	37	16	1.90
40247--40308	7	9.0	7	84	8	74	16	12	12	58	1.64
41377--41402	2	13.0	2	100	0	52	50	0	0	50	1.00
41660--41712	27	2.0	27	89	7	83	73	7	16	1	1.15
41671--41761	20	4.4	20	74	16	71	78	4	16	1	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41703--41770	29	2.3	29	85	7	84	80	2	16	0	0.82
41665--41770	47	2.3	44	81	12	115	78	3	16	0	0.95
41665--41770	15	6.9	15	72	12	81	78	3	16	0	0.95
41691--41770	18	4.2	19	79	19	87	80	2	16	1	0.90
41665--41770	9	11.4	9	73	21	62	78	3	16	0	0.95
43721--43975	54	4.8	54	80	7	263	30	10	16	42	1.81
43721--43953	107	2.2	107	80	6	260	31	10	16	42	1.81
43721--44070	161	2.2	161	79	4	357	31	10	16	42	1.81
43915--44136	54	4.2	53	80	11	217	28	9	18	43	1.80
44557--45050	139	3.6	139	93	1	816	36	18	21	23	1.95
56732--56778	16	3.1	15	79	8	51	25	2	4	68	1.19
61403--61495	18	5.2	17	74	13	80	36	1	2	60	1.16
61400--61481	38	2.3	35	81	10	94	36	1	2	59	1.18
61768--61801	9	3.7	9	88	4	50	50	14	8	26	1.72
65842--65903	28	2.2	29	88	8	92	27	12	11	48	1.76
66834--66909	39	1.9	39	100	0	152	26	9	19	44	1.80
66834--66921	33	2.4	36	89	10	128	30	7	19	42	1.80
67164--67218	20	2.8	20	94	5	96	45	10	25	18	1.82
67164--67218	18	2.9	18	86	10	67	45	10	25	18	1.82
70482--70543	27	2.3	27	94	0	106	0	29	27	43	1.55
73242--73281	20	2.0	20	90	9	64	52	0	0	47	1.00
74113--74158	18	2.6	18	77	16	51	32	6	0	60	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75048--75084	14	2.6	15	87	12	60	32	21	0	45	1.52
75144--75201	21	2.8	21	97	0	107	32	17	0	50	1.46
75156--75195	12	3.6	12	74	19	50	30	20	0	50	1.49
79187--79223	14	2.6	15	87	12	60	32	21	0	45	1.52
79283--79322	21	1.9	21	100	0	80	32	17	0	50	1.47
79716--79765	19	2.6	19	96	0	91	24	30	16	30	1.96
80998--81290	42	7.1	42	75	4	193	33	20	13	32	1.92
83077--83112	14	2.6	14	86	0	54	11	11	19	58	1.62
84149--84287	72	1.9	72	91	1	226	38	20	16	24	1.93
89914--89966	21	2.5	21	84	0	61	26	22	24	26	2.00
91803--91894	46	2.0	46	97	0	175	28	20	4	46	1.69
95802--95843	21	2.0	20	86	4	57	40	7	14	38	1.73
100472--100513	21	2.0	20	86	4	57	40	7	14	38	1.73
104607--104639	16	2.1	16	100	0	66	57	24	12	6	1.57
104705--104779	10	7.7	10	69	21	61	57	21	12	9	1.62
104709--104773	16	4.1	16	95	0	121	56	23	12	7	1.61
105527--105582	14	4.3	14	82	17	75	51	25	14	8	1.70
105507--105581	24	3.1	24	90	3	107	54	21	12	12	1.69
105520--105567	10	4.4	10	78	19	51	54	22	12	10	1.68
108898--108956	31	1.9	31	92	0	100	42	5	8	44	1.57
108980--109270	22	13.3	22	90	2	460	48	11	0	40	1.40
108980--109550	44	12.8	44	89	5	824	48	11	0	40	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108980--109550	66	8.5	66	88	5	824	48	11	0	40	1.39
109241--109299	31	1.9	31	96	0	109	44	8	0	47	1.33
109272--109550	22	12.7	22	90	1	443	48	10	0	40	1.38
109582--109610	10	2.9	10	100	0	58	31	10	27	31	1.90
125274--125360	45	1.9	45	100	0	174	34	10	19	35	1.86
130069--130119	21	2.4	21	93	0	84	33	29	19	17	1.95
130069--130137	21	3.3	21	87	4	77	33	28	15	21	1.95
138391--138525	9	14.3	9	68	14	58	74	0	4	20	1.04
138469--138525	26	2.2	26	84	6	80	82	0	3	14	0.80
138631--138676	22	2.0	23	87	4	67	58	8	10	21	1.58
138904--138972	2	34.5	2	100	0	138	49	0	0	50	1.00
139874--139904	3	10.3	3	92	0	53	67	3	0	29	1.06
140237--140362	51	2.5	50	84	1	135	17	30	30	20	1.96
140376--140499	50	2.5	51	89	1	196	25	24	22	27	2.00
143860--143898	20	2.0	19	90	5	60	43	0	23	33	1.54
145686--145819	36	3.7	35	80	10	110	48	5	5	41	1.48
145690--145819	39	3.5	38	78	15	112	47	5	5	41	1.49
147540--147584	14	3.2	13	84	15	54	20	0	2	77	0.87
147545--147584	14	2.8	14	85	14	55	20	0	2	77	0.88
147545--147594	15	3.5	15	84	10	52	18	4	2	76	1.04
150280--150481	100	2.0	102	88	5	304	33	15	17	33	1.92
151676--152714	84	12.4	85	83	3	1271	32	24	19	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151676--152714	168	6.2	168	88	0	1472	32	24	19	23	1.97
153296--153464	36	4.6	36	77	10	146	47	7	5	39	1.57
153452--153485	12	3.0	12	87	12	54	35	5	0	58	1.22
155156--155199	17	2.6	18	82	13	58	13	0	2	84	0.73
155156--155209	17	3.2	16	77	15	56	12	1	1	83	0.81
155155--155210	22	2.5	23	86	11	73	14	1	1	82	0.84
155155--155198	23	2.0	23	95	4	81	13	0	2	84	0.73
155156--155211	29	2.0	28	82	10	69	14	1	1	82	0.84
155933--156049	62	1.9	62	84	7	157	46	7	3	42	1.49
156153--156225	34	2.1	35	80	12	80	47	6	4	41	1.49

Tables:   1   2