genome.fa.s8642.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008642.1 Hibiscus syriacus cultivar Beakdansim tig00111618_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  212011

Tables:   1   2   

This is table  2  of  2  ( 176 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
155975--156269	157	1.9	156	90	2	475	47	9	5	37	1.59
161229--161372	72	2.0	72	98	0	279	40	17	5	36	1.73
162581--162629	25	2.0	25	88	8	73	36	0	0	63	0.95
162738--162786	22	2.1	24	81	7	57	38	0	4	57	1.18
164390--164429	21	1.9	21	94	0	71	17	37	22	22	1.94
165836--165880	14	3.2	14	100	0	90	57	15	0	26	1.38
165950--166153	23	9.4	23	68	15	114	36	22	0	40	1.60
165946--166138	63	3.0	63	95	0	341	37	22	1	38	1.62
165999--166102	31	3.3	31	64	12	77	39	23	1	35	1.66
166201--166834	138	4.6	138	94	0	1072	32	22	22	22	1.98
171308--171465	21	7.8	20	70	7	77	37	24	17	19	1.93
171433--171626	20	9.6	20	76	8	76	35	25	19	19	1.95
171433--171626	40	4.8	39	82	3	199	35	25	19	19	1.95
171433--171625	60	3.2	60	83	0	251	35	25	19	19	1.95
171771--171824	22	2.5	22	78	3	65	24	38	16	20	1.92
172006--172113	33	3.3	33	89	0	171	10	24	19	46	1.80
172030--172111	14	4.9	18	64	26	54	9	24	20	45	1.81
172049--172105	14	3.7	14	77	20	60	8	26	22	42	1.83
173808--174168	90	4.0	92	93	5	625	21	13	18	46	1.83
173804--174174	179	2.1	180	93	5	644	21	12	18	46	1.83
174216--174343	19	7.3	19	73	19	107	45	28	17	8	1.78
174251--174343	33	2.8	32	91	4	150	46	27	18	7	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
174216--174343	52	2.5	51	73	15	136	45	28	17	8	1.78
174339--174473	19	7.6	19	75	16	128	11	19	23	45	1.82
174361--174417	14	3.7	14	77	20	60	10	21	22	45	1.82
174344--174436	33	2.8	33	95	0	168	10	20	21	47	1.80
176354--176389	14	2.6	14	95	0	63	33	0	22	44	1.53
176493--176575	19	4.6	19	80	17	113	43	18	24	14	1.87
176604--176858	19	14.4	19	81	16	325	13	21	18	47	1.82
176582--176791	52	3.9	52	84	9	255	14	21	17	46	1.83
176582--176858	90	3.2	90	89	7	398	14	21	18	46	1.83
176604--176830	52	4.2	55	93	6	314	14	22	16	47	1.82
176623--176858	33	6.8	33	81	12	210	13	21	18	47	1.82
177754--178142	20	19.5	20	84	6	448	20	18	25	35	1.95
179819--179843	13	1.9	13	100	0	50	48	0	4	48	1.20
180022--180126	37	2.8	37	85	0	138	40	14	14	30	1.85
180799--180848	20	2.5	20	80	9	57	24	0	0	76	0.80
180776--180879	55	1.9	55	82	7	131	27	3	0	67	1.14
185588--185627	10	3.9	10	84	15	55	80	5	15	0	0.88
185588--185644	21	2.8	20	79	15	62	78	7	12	1	1.01
185579--185650	20	3.6	19	80	12	65	80	6	11	1	0.96
185579--185636	10	5.5	11	78	15	52	81	6	12	0	0.88
185582--185650	24	2.8	24	78	14	70	79	7	11	1	0.98
185579--185650	13	5.3	13	72	19	58	80	6	11	1	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
186253--186307	22	2.5	22	96	0	101	38	27	10	23	1.88
187254--188208	106	9.0	105	89	3	1438	34	24	18	22	1.96
188399--188728	83	3.9	83	82	6	353	33	22	19	24	1.97
189209--189313	37	2.8	37	83	0	138	40	15	12	31	1.84
189730--189764	12	2.7	13	86	13	54	28	0	0	71	0.86
190008--190059	8	5.9	9	86	13	65	23	0	0	76	0.78
190007--190058	17	3.1	16	86	8	68	23	0	0	76	0.78
189948--190074	27	4.4	29	73	11	111	25	3	1	68	1.16
189956--190074	26	4.3	28	68	23	83	26	3	1	68	1.15
196823--196854	2	16.0	2	100	0	64	50	0	0	50	1.00
198327--198598	91	3.0	92	83	5	338	55	16	12	15	1.69
209745--209803	29	2.0	29	100	0	118	30	25	3	40	1.72

Tables:   1   2

The End!