genome.fa.s8651.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008651.1 Hibiscus syriacus cultivar Beakdansim tig00111641_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  314694

Tables:   1   2   

This is table  2  of  2  ( 155 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
290063--290125	23	2.7	23	90	0	90	38	19	6	36	1.77
290471--290536	25	2.6	25	80	0	87	42	13	9	34	1.76
290513--290570	19	3.1	19	65	9	55	32	12	12	43	1.79
293002--293710	183	3.9	183	96	0	1301	33	16	14	35	1.89
295130--295174	3	15.0	3	85	0	63	26	33	2	37	1.69
295134--295222	12	7.4	12	81	0	79	21	33	7	37	1.82
295134--295225	18	5.1	18	74	0	67	20	33	7	38	1.81
295134--295225	6	15.3	6	76	0	58	20	33	7	38	1.81
296683--297851	198	5.9	198	99	0	2275	31	16	15	36	1.90
297970--298018	19	2.6	19	90	0	71	59	8	2	30	1.38
299811--299876	33	2.0	33	93	0	114	22	50	0	27	1.50
299910--299974	21	3.1	21	80	6	69	15	29	15	40	1.88
302199--302246	20	2.3	20	80	13	62	18	16	10	54	1.70
302368--302413	20	2.3	20	89	10	76	17	17	10	54	1.70
303418--303459	15	2.8	15	78	10	50	47	0	0	52	1.00
305156--305311	41	3.8	41	82	6	165	33	25	20	20	1.97
305177--305291	20	5.7	20	84	6	133	31	26	19	22	1.98
305154--305236	21	4.0	22	75	10	84	39	24	20	15	1.91
307267--307304	20	1.9	20	88	0	58	39	21	21	18	1.93
307323--307406	19	4.7	19	87	10	124	15	21	16	46	1.84
307323--307419	38	2.8	33	82	14	131	15	22	16	45	1.85
307546--307582	14	2.6	14	86	0	56	48	21	0	29	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
309441--309494	20	2.7	20	85	0	72	37	24	25	12	1.91
309481--309591	33	3.4	32	83	13	122	47	21	18	12	1.81
309535--309591	17	3.4	16	74	9	60	47	26	19	7	1.74
309603--309733	19	7.3	19	70	18	84	12	19	22	44	1.85
309620--309678	14	3.9	14	76	20	64	10	16	23	49	1.77
309603--309694	33	2.8	33	98	0	175	11	18	21	47	1.80
309679--309733	20	2.8	19	83	8	65	16	23	23	36	1.94
310210--310254	18	2.5	18	88	0	72	13	15	44	26	1.83
311571--311629	20	3.0	20	87	0	73	42	22	18	16	1.89
311892--311935	22	2.0	22	95	0	79	18	15	45	20	1.85
312124--312237	20	5.7	20	84	6	140	23	19	27	29	1.98
312104--312239	41	3.3	41	83	6	177	23	18	25	32	1.97
312104--312259	41	3.8	41	81	3	136	22	19	25	32	1.97

Tables:   1   2

The End!