genome.fa.s8658.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008658.1 Hibiscus syriacus cultivar Beakdansim tig00111653_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  445414

Tables:   1   2   

This is table  2  of  2  ( 197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
281053--281096	19	2.6	16	82	13	52	65	6	2	25	1.28
282377--282545	81	2.1	82	88	3	252	22	17	23	37	1.94
282515--282657	55	2.6	55	86	2	189	25	19	20	34	1.96
282646--282799	82	1.9	81	85	4	211	27	16	17	38	1.91
282646--282799	81	1.9	81	85	6	213	27	16	17	38	1.91
282369--282947	273	2.1	273	83	3	745	26	18	21	34	1.96
282788--282944	55	2.8	55	77	4	163	29	17	22	30	1.97
282931--283180	89	2.8	89	85	0	338	32	16	19	31	1.94
283405--283473	30	2.2	30	85	15	95	34	5	17	42	1.73
283414--283473	30	2.0	30	93	6	104	33	6	16	43	1.74
283651--283727	21	3.7	21	89	1	111	22	25	24	27	2.00
284111--284180	34	2.1	32	86	5	95	31	15	30	22	1.95
285040--285087	20	2.5	19	86	6	69	56	4	12	27	1.54
286326--286416	31	3.0	31	96	3	168	32	6	17	42	1.75
286496--286615	21	5.7	21	78	3	125	21	32	20	25	1.97
286496--286614	63	1.9	63	84	3	159	21	31	20	26	1.98
286636--286702	20	3.3	20	79	4	71	19	22	23	34	1.97
286654--286718	21	3.1	21	76	8	71	20	26	27	26	1.99
286636--286718	41	2.0	41	86	4	114	20	24	25	30	1.99
287797--287834	20	1.9	20	88	0	58	21	15	31	31	1.94
290422--290500	23	3.5	22	76	11	72	27	24	24	24	2.00
296223--296382	66	2.5	66	86	6	220	29	17	21	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
296678--297032	89	4.0	89	88	4	457	30	19	19	30	1.96
296678--297028	179	2.0	178	85	5	476	30	19	19	30	1.96
301666--302181	62	8.5	62	78	5	480	33	15	24	26	1.95
301666--302145	176	2.7	176	79	6	473	32	15	25	26	1.95
303220--303326	40	2.6	39	82	11	117	28	25	12	33	1.92
311513--311540	3	9.3	3	100	0	56	67	0	0	32	0.91
313372--313410	18	2.2	18	90	0	60	43	35	7	12	1.72
319782--319820	18	2.2	18	90	0	60	43	35	7	12	1.72
323066--323122	26	2.2	26	96	0	105	40	12	15	31	1.85
323081--323137	26	2.2	26	87	3	78	40	17	12	29	1.86
328375--328404	3	10.0	3	100	0	60	33	0	0	66	0.92
330652--330693	21	2.0	21	85	0	57	21	23	21	33	1.97
335934--336007	23	3.2	23	74	0	85	32	21	24	21	1.98
336109--336178	15	4.7	15	78	3	79	41	18	8	31	1.81
337500--337534	13	2.8	13	91	4	54	40	0	11	48	1.39
338568--338962	54	7.3	54	90	1	569	30	17	18	33	1.94
338881--338997	54	2.2	54	80	0	135	32	17	18	30	1.95
344901--344935	11	3.1	11	87	4	52	62	8	20	8	1.49
350419--350467	23	2.3	22	89	10	75	18	38	22	20	1.93
350450--350489	21	1.9	21	84	0	53	25	37	27	10	1.88
358068--358101	11	3.2	11	91	4	52	58	8	20	11	1.59
360087--360516	215	2.0	216	87	1	630	27	18	19	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
360087--360516	54	8.0	54	88	0	619	27	18	19	34	1.95
362418--362476	24	2.5	24	88	0	82	32	25	22	20	1.98
362481--362546	23	2.9	23	81	0	87	33	25	22	18	1.97
362648--362717	15	4.7	15	76	3	70	42	18	5	32	1.74
362648--362718	30	2.4	30	78	0	79	43	18	5	32	1.73
364986--365104	53	2.3	52	81	7	134	36	4	7	52	1.49
365467--365518	27	1.9	27	84	7	70	17	15	0	67	1.24
366407--366445	15	2.6	16	92	8	64	10	5	12	71	1.28
366408--366457	15	3.3	15	86	10	50	6	8	12	74	1.22
366412--366462	23	2.1	25	82	7	61	7	9	9	72	1.28
374986--375100	51	2.3	51	86	3	151	36	4	7	51	1.51
375393--375438	9	4.8	9	91	8	65	28	32	8	30	1.87
376046--376087	22	1.9	22	90	0	66	33	11	19	35	1.88
377887--377937	25	1.9	27	84	11	70	47	5	7	39	1.57
380429--380472	3	14.0	3	81	9	52	36	0	0	63	0.95
384543--384582	21	1.9	21	90	10	64	57	7	5	30	1.48
388401--388446	23	2.0	22	91	4	74	23	32	23	19	1.97
389979--390150	90	1.9	90	94	2	303	44	6	11	37	1.67
391402--391526	31	4.0	31	88	2	171	20	17	21	40	1.92
392266--392313	22	2.2	21	81	7	51	25	27	31	16	1.97
399324--399700	55	6.9	55	89	0	529	36	18	14	30	1.91
399324--399700	165	2.3	165	91	1	605	36	18	14	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
401165--401228	22	2.9	22	85	0	83	23	34	25	17	1.96
407010--407090	23	3.7	22	82	12	96	23	30	25	19	1.98
417744--417806	21	3.0	20	80	15	74	25	39	23	11	1.88
425585--425690	53	2.0	53	96	0	194	36	17	23	21	1.95
431066--431103	20	1.9	20	94	0	67	31	34	15	18	1.92
431066--431272	65	3.2	63	81	8	213	30	23	18	27	1.98
431065--431299	129	1.8	129	80	8	289	30	22	20	26	1.98
438679--438722	21	2.1	21	82	0	52	6	38	18	36	1.77
439441--439475	18	1.9	18	88	0	52	31	8	5	54	1.54
439830--439952	64	1.9	65	85	5	169	30	21	19	28	1.98
443402--443457	25	2.2	25	81	6	69	35	19	21	23	1.96

Tables:   1   2

The End!