genome.fa.s8659.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008659.1 Hibiscus syriacus cultivar Beakdansim tig00111655_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  244888

Tables:   1   2   

This is table  2  of  2  ( 180 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
200540--200593	24	2.3	23	81	9	63	46	1	1	50	1.23
205872--205924	21	2.5	21	93	0	88	30	30	20	18	1.97
205936--206115	21	8.8	21	77	12	178	21	20	25	33	1.97
205920--206115	40	4.8	40	81	3	239	21	20	23	34	1.97
205914--206115	82	2.5	82	89	1	318	21	20	23	33	1.97
205928--206115	19	9.3	19	76	13	169	21	20	23	33	1.97
206743--206835	21	4.6	20	81	4	105	38	17	24	19	1.92
206740--206835	41	2.3	41	96	0	174	39	16	23	19	1.92
206743--206835	20	4.6	20	81	4	105	38	17	24	19	1.92
206824--206917	20	4.7	20	77	2	80	35	24	17	23	1.95
206821--206898	41	1.9	41	83	0	102	41	21	15	21	1.90
207432--207502	19	3.7	19	84	1	88	45	22	21	11	1.83
207498--207682	19	10.1	19	75	14	165	12	21	22	43	1.86
207498--207587	39	2.3	38	92	1	144	12	18	22	46	1.82
207570--207657	33	2.6	33	90	1	131	11	23	25	39	1.88
207625--207682	20	2.9	20	80	10	64	13	24	18	43	1.87
208569--208621	21	2.5	21	93	0	88	30	32	20	16	1.95
208633--208812	21	8.8	21	77	12	178	21	20	25	33	1.97
208625--208812	40	4.6	40	84	4	241	21	20	23	33	1.97
208611--208812	82	2.5	82	89	1	318	21	20	23	33	1.97
208625--208812	19	9.3	19	76	13	169	21	20	23	33	1.97
208902--208938	6	6.5	6	93	6	60	35	48	16	0	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
209445--209537	21	4.6	20	81	4	105	38	17	24	19	1.92
209442--209537	41	2.3	41	96	0	174	39	16	23	19	1.92
209445--209537	20	4.6	20	81	4	105	38	17	24	19	1.92
209526--209618	20	4.7	20	79	0	87	34	24	17	23	1.96
209523--209599	40	1.9	40	83	0	100	40	22	15	22	1.91
210180--210364	19	10.1	19	74	14	156	12	21	21	44	1.85
210180--210269	39	2.3	38	92	1	144	12	18	22	46	1.82
210252--210339	33	2.6	33	84	8	115	11	23	23	40	1.87
210307--210364	20	2.9	20	80	10	64	13	24	18	43	1.87
212366--212458	42	2.2	42	82	0	114	22	38	15	23	1.92
212422--212488	21	3.2	21	66	6	55	23	35	20	19	1.95
213847--213882	14	2.6	14	95	0	63	30	0	25	44	1.54
214059--214158	19	5.8	19	70	21	94	14	24	18	44	1.86
214065--214158	33	2.8	33	96	0	170	13	24	18	43	1.86
218327--218377	20	2.5	20	93	0	84	33	23	23	19	1.97
218407--218479	14	4.5	15	74	22	60	13	20	19	46	1.83
218403--218469	18	3.8	19	83	16	92	13	22	17	46	1.83
218586--218622	14	2.6	14	86	0	56	48	21	0	29	1.50
220517--220574	14	3.9	14	79	16	71	48	25	17	8	1.75
220501--220579	32	2.4	33	95	2	142	46	24	18	10	1.80
220586--220650	18	3.8	18	76	17	75	10	20	23	46	1.81
220608--220662	14	3.6	14	77	17	65	9	18	27	45	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
220591--220681	32	2.8	32	91	5	137	10	17	25	46	1.81
221154--221198	18	2.5	18	85	0	63	15	15	42	26	1.87
222516--222553	20	1.9	20	88	0	58	50	21	15	13	1.78
222817--222860	22	2.0	22	95	0	79	18	15	45	20	1.85
223046--223139	20	4.7	20	80	2	89	23	17	24	35	1.95
223066--223143	41	1.9	41	86	0	111	21	16	21	39	1.92
223026--223140	20	5.7	20	78	5	88	23	16	23	36	1.94
223066--223161	41	2.3	41	80	3	104	20	19	21	37	1.94
223740--223772	6	5.5	6	96	0	57	3	15	51	30	1.58
225333--225570	2	130.0	2	66	26	93	40	1	4	53	1.28
225351--225565	7	30.4	7	68	22	105	40	1	4	53	1.29
225392--225587	5	38.2	5	68	22	97	39	1	3	55	1.26
225558--225595	16	2.4	16	90	0	58	28	2	0	68	1.03
228392--228443	21	2.5	21	81	6	61	50	1	30	17	1.57
234307--234350	19	2.3	19	96	0	79	36	9	0	54	1.32
243348--243405	27	2.1	27	90	3	89	44	8	15	31	1.76

Tables:   1   2

The End!