genome.fa.s8680.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008680.1 Hibiscus syriacus cultivar Beakdansim tig00111701_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  579941

Tables:   1   2   

This is table  1  of  2  ( 197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--13800	7	1977.1	7	99	0	27041	42	43	0	14	1.45
13665--13829	34	5.2	32	79	13	132	41	55	0	3	1.15
19715--19752	3	13.0	3	88	5	51	63	5	0	31	1.17
25286--25332	24	2.0	24	87	8	69	19	29	19	31	1.96
25330--25363	16	2.1	16	89	10	52	14	44	17	23	1.86
26828--26860	2	16.5	2	100	0	66	51	0	0	48	1.00
26860--26891	2	16.0	2	100	0	64	50	0	50	0	1.00
29418--29534	35	3.3	36	89	5	168	45	18	5	30	1.71
30770--30820	22	2.3	22	86	0	66	21	29	19	29	1.98
33915--33951	19	1.9	19	100	0	74	21	0	29	48	1.50
34129--34192	20	3.4	20	66	29	59	45	18	4	31	1.70
34045--34197	37	4.3	36	90	4	222	45	18	3	31	1.68
45976--46027	21	2.5	21	81	3	61	38	19	25	17	1.93
46016--46150	20	6.7	20	78	7	130	33	23	17	25	1.96
46013--46144	61	2.2	61	88	0	192	35	23	16	24	1.95
46329--46369	22	2.0	21	85	9	57	24	41	12	21	1.87
46624--46682	20	3.0	20	87	0	73	16	18	22	42	1.89
48002--48046	18	2.5	18	81	0	63	26	42	15	15	1.87
48528--48573	20	2.3	20	84	0	56	36	23	21	17	1.94
48539--48583	20	2.3	20	84	3	65	37	20	24	17	1.93
48567--48663	19	5.6	19	71	22	97	45	19	20	14	1.85
48583--48641	14	3.9	14	72	20	55	49	20	16	13	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48567--48660	33	2.8	33	95	0	170	45	19	20	14	1.85
48677--48764	14	5.6	14	73	21	77	11	17	22	48	1.78
48670--48781	33	3.4	33	97	1	208	12	18	22	46	1.82
48766--48821	20	2.8	19	86	7	76	16	25	23	35	1.94
51060--51113	14	3.5	14	77	22	63	48	20	20	11	1.80
51144--51219	40	1.9	40	89	2	118	18	21	21	39	1.93
51137--51236	20	5.0	20	74	4	85	16	21	20	43	1.88
51773--51894	20	6.8	19	69	20	84	44	20	22	12	1.85
51822--51882	14	4.0	14	71	19	50	42	24	22	9	1.84
51801--51894	33	2.8	33	93	1	152	42	23	22	11	1.86
51895--51961	19	3.5	19	85	2	89	10	16	25	47	1.78
52483--52534	20	2.6	21	90	6	81	25	17	25	32	1.97
52525--52574	20	2.5	20	86	3	64	22	22	18	38	1.94
52564--52637	21	3.5	21	92	3	123	35	16	25	22	1.95
52480--52657	21	8.7	21	77	6	80	30	17	22	29	1.97
52481--52666	41	4.5	41	72	10	121	30	17	22	29	1.96
61485--61532	17	2.7	18	74	9	53	41	2	4	52	1.32
62419--62487	31	2.2	31	80	10	79	59	5	11	23	1.53
63138--63184	25	1.9	24	91	4	76	51	4	14	29	1.62
66889--67103	108	2.0	107	87	0	313	32	15	9	42	1.79
71477--71543	34	1.9	34	82	14	84	47	19	11	20	1.81
77251--77293	2	21.5	2	100	0	86	51	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80187--80260	3	24.7	3	100	0	148	66	0	0	33	0.92
83065--83100	2	18.0	2	100	0	72	50	0	0	50	1.00
96114--96181	28	2.4	28	82	9	75	51	14	7	26	1.68
96701--96757	24	2.3	25	87	6	89	43	14	21	21	1.87
100641--100674	17	2.0	17	88	0	50	11	23	0	64	1.26
104684--104721	17	2.3	16	86	13	51	42	0	0	57	0.98
111274--111323	23	2.2	23	81	0	55	34	22	6	38	1.78
111342--111436	39	2.4	39	82	7	102	40	14	4	41	1.66
116837--117053	92	2.3	94	93	2	366	38	17	8	35	1.80
117036--117093	26	2.2	27	78	9	66	36	15	13	34	1.87
117406--117450	23	1.9	24	86	4	65	57	4	0	37	1.19
117981--118058	31	2.5	31	80	10	90	38	1	6	53	1.35
121258--121293	18	2.0	18	94	0	63	33	8	22	36	1.84
121985--122011	2	13.5	2	100	0	54	51	0	0	48	1.00
145154--145202	23	2.1	23	88	0	71	46	14	20	18	1.83
147776--147805	4	7.5	4	92	0	51	73	0	0	26	0.84
152468--152855	195	2.0	197	89	2	602	28	18	17	35	1.94
155904--155965	32	1.9	32	96	0	115	32	6	14	46	1.70
169840--169889	22	2.4	21	80	9	57	40	10	6	44	1.63
172014--172052	19	2.0	21	90	10	64	43	0	2	53	1.14
183211--183236	6	4.3	6	100	0	52	34	19	0	46	1.50
190562--190847	102	2.8	102	88	0	419	27	13	34	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
196753--196819	32	2.1	32	91	0	107	53	10	2	32	1.50
197892--197935	23	1.9	23	90	0	70	31	25	25	18	1.97
199357--199401	23	2.0	23	86	0	63	26	28	24	20	1.99
199380--199683	149	2.0	149	99	0	599	35	20	16	27	1.94
200163--200313	67	2.3	67	92	2	250	16	25	27	29	1.97
206387--206431	23	2.0	23	86	0	63	26	28	24	20	1.99
206410--206713	149	2.0	149	98	0	590	35	20	16	27	1.94
207194--207365	66	2.6	67	89	3	249	17	25	26	30	1.97
215952--216000	22	2.2	22	100	0	98	18	20	14	46	1.83
225114--225555	218	2.0	218	98	0	857	30	10	21	37	1.88
231147--231188	18	2.3	19	80	12	52	64	0	7	28	1.20
248478--248522	23	2.0	22	86	4	63	26	0	8	64	1.23
250453--250513	16	3.6	16	75	8	50	26	0	3	70	1.02
258606--258692	24	3.5	24	76	14	79	33	13	12	40	1.83
258606--258680	24	3.0	24	80	14	80	36	16	13	34	1.87
258612--258690	23	3.2	24	77	11	72	32	12	12	41	1.81
258663--258745	39	2.1	39	82	8	98	34	10	8	45	1.69
271665--271703	16	2.4	16	86	0	60	51	0	5	43	1.24
273624--273668	20	2.2	20	96	0	81	28	26	11	33	1.91
275445--276280	366	2.3	360	85	5	1123	34	20	18	26	1.96
275445--276318	365	2.4	361	84	7	1126	34	20	18	26	1.96
281646--281680	2	17.5	2	100	0	70	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
283220--283253	9	3.7	9	92	4	50	50	14	8	26	1.72
283259--283645	184	2.1	183	90	1	607	46	8	2	42	1.47
283953--283979	2	13.5	2	100	0	54	51	0	0	48	1.00
289319--289453	68	2.0	69	85	7	186	42	13	5	39	1.66
290666--291224	293	1.9	290	82	4	685	42	18	13	25	1.86
291789--291818	15	2.0	15	93	0	51	56	0	40	3	1.16
300790--300832	22	1.9	23	90	4	70	48	2	0	48	1.14
300916--300983	23	2.9	24	80	8	68	48	5	1	44	1.36
302818--302883	30	2.2	30	83	0	78	10	27	24	37	1.88
303346--303514	5	33.6	5	96	1	176	30	0	10	59	1.30
303346--303514	15	11.2	15	93	1	203	30	0	10	59	1.30
307982--308058	40	2.0	39	90	7	122	44	14	2	38	1.59
307982--308059	37	2.1	35	84	13	95	44	14	2	38	1.58
309988--310020	15	2.3	15	89	5	50	30	0	0	69	0.88
309999--310038	18	2.3	18	86	4	55	25	2	2	70	1.13
316832--316871	6	6.7	6	85	0	53	0	5	17	77	0.94
321082--322238	384	3.0	384	99	0	2307	38	9	11	40	1.73
325900--325950	22	2.3	22	100	0	102	37	7	17	37	1.79
335683--335913	111	2.1	111	89	0	363	19	27	25	27	1.99
336704--336732	2	14.5	2	100	0	58	51	0	0	48	1.00
336771--336826	27	2.0	28	89	3	87	42	1	0	55	1.10
336956--336994	2	20.0	2	94	5	71	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
337974--338003	15	2.0	15	93	0	51	6	10	66	16	1.41
346765--346807	21	2.2	20	83	8	52	62	16	4	16	1.48
348454--348484	13	2.3	14	94	5	55	35	6	0	58	1.24
354348--354390	15	2.9	15	76	13	52	0	11	34	53	1.37
354343--354411	33	2.1	33	86	0	93	0	10	37	52	1.36
357863--357905	2	21.5	2	100	0	86	51	0	0	48	1.00
360694--360726	2	16.5	2	100	0	66	51	0	0	48	1.00
361105--361138	2	17.0	2	93	0	59	2	47	0	50	1.16
363555--363585	14	2.2	14	100	0	62	41	0	6	51	1.27
365835--365955	35	3.5	35	90	0	179	38	16	15	29	1.90

Tables:   1   2