genome.fa.s8680.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008680.1 Hibiscus syriacus cultivar Beakdansim tig00111701_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  579941

Tables:   1   2   

This is table  2  of  2  ( 197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365812--365955	70	2.1	70	85	2	191	37	16	15	29	1.90
368720--368756	3	12.3	3	100	0	74	35	0	0	64	0.94
378294--378345	26	2.0	25	92	3	86	7	23	0	69	1.14
380109--380269	64	2.5	65	84	7	186	33	18	20	27	1.96
381649--381711	21	3.0	21	88	4	90	26	25	23	23	2.00
381648--381719	22	3.3	22	86	3	101	27	23	20	27	1.99
382729--382778	26	1.9	26	88	8	75	64	0	28	8	1.22
383722--384139	210	2.0	211	98	0	811	40	10	9	39	1.72
385660--385688	14	2.0	15	93	6	51	55	20	3	20	1.58
391443--391481	6	6.5	6	100	0	78	51	0	48	0	1.00
392388--392769	191	2.0	191	100	0	764	37	7	13	41	1.73
396357--396966	305	2.0	302	93	3	1044	35	17	11	34	1.87
399743--399770	14	2.0	14	100	0	56	35	28	7	28	1.84
406082--406114	3	11.3	3	87	6	50	72	0	0	27	0.85
407483--407521	17	2.2	18	86	4	53	69	2	0	28	1.02
413620--413649	15	2.0	15	93	0	51	43	13	16	26	1.85
424289--424319	2	15.5	2	93	0	53	51	0	0	48	1.00
425897--426389	213	2.3	215	87	5	694	31	27	15	25	1.96
427418--427490	24	3.0	24	100	0	146	38	24	16	20	1.93
430209--430275	30	2.3	30	84	7	93	46	0	2	50	1.16
430226--430268	20	2.2	19	84	12	52	48	0	4	46	1.22
432481--432528	2	24.5	2	95	4	89	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
437252--437313	31	2.2	28	81	16	74	17	24	29	29	1.97
445616--445772	37	4.3	37	85	0	190	38	22	11	26	1.88
448019--448044	13	2.0	13	100	0	52	53	0	0	46	1.00
448157--448191	1	35.0	1	88	0	52	94	5	0	0	0.32
448157--448189	10	3.4	10	95	4	59	93	6	0	0	0.33
449648--449884	122	1.9	124	98	1	460	43	6	5	45	1.51
449788--449955	36	4.6	36	78	8	117	45	6	2	44	1.44
449788--449994	75	2.8	72	81	9	204	45	7	3	43	1.48
449669--449940	122	2.2	122	87	7	358	45	6	4	44	1.49
450645--451910	249	5.1	248	85	3	1451	25	20	23	30	1.99
450567--451910	164	8.1	162	81	6	1349	25	20	23	30	1.98
450625--451881	329	3.8	329	84	4	1571	25	20	23	30	1.98
455129--455173	19	2.4	19	92	3	74	66	8	13	11	1.44
457049--457095	2	24.0	2	95	4	87	48	0	0	51	1.00
458307--458341	11	3.2	11	91	0	52	71	0	5	22	1.07
458361--458747	38	10.0	36	72	17	219	44	6	4	44	1.49
458512--458588	25	3.0	25	72	7	73	46	5	2	45	1.39
458531--458560	15	1.9	16	93	6	53	53	6	0	40	1.27
458420--458673	127	2.0	127	99	0	499	43	6	4	45	1.50
458494--458595	27	3.8	26	69	23	70	44	4	3	47	1.43
460515--460548	2	17.0	2	93	0	59	50	2	0	47	1.16
462732--462867	4	34.0	4	96	0	254	26	0	24	49	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
464795--464820	3	8.7	3	100	0	52	30	0	0	69	0.89
467149--467173	13	1.9	13	100	0	50	16	16	16	52	1.76
467349--467518	60	2.8	59	79	5	198	35	22	4	37	1.74
483688--483722	10	3.6	10	92	3	54	60	2	37	0	1.12
484671--484712	3	14.0	3	100	0	84	0	33	0	66	0.92
486598--486653	25	2.2	25	90	3	85	17	0	0	82	0.68
486599--486652	12	4.3	13	90	6	85	16	0	0	83	0.65
490227--490344	38	3.1	38	98	0	227	24	17	27	30	1.97
499569--499606	17	2.2	17	100	0	76	28	28	7	34	1.85
500337--500616	141	2.0	141	94	0	488	25	23	17	33	1.96
528397--528450	24	2.2	25	86	6	74	12	18	24	44	1.85
539356--539388	16	2.1	16	100	0	66	45	6	24	24	1.75
540952--540999	23	2.1	23	88	0	69	35	12	18	33	1.89
541727--541763	18	2.1	18	89	0	56	51	10	5	32	1.60
541967--542030	22	2.8	23	85	4	85	39	18	7	34	1.80
542175--542241	30	2.2	30	82	10	75	40	0	4	55	1.20
542393--542451	23	2.6	23	88	0	82	38	16	6	37	1.76
545266--545800	181	2.9	184	97	1	1015	34	15	14	35	1.89
547149--547232	3	28.0	3	73	4	71	23	33	5	36	1.79
547149--547247	12	8.0	12	77	10	65	22	33	7	37	1.81
547153--547247	6	15.3	6	74	10	57	21	33	7	37	1.81
548708--550102	198	7.1	199	95	2	2500	32	15	14	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
548708--550102	393	3.5	397	95	2	2507	32	15	14	37	1.88
550195--550235	19	2.2	19	90	0	64	58	9	2	29	1.43
552024--552089	33	2.0	33	87	0	96	24	45	1	28	1.62
554196--554248	24	2.2	24	83	6	63	26	7	13	52	1.66
554393--554439	20	2.4	19	79	10	58	19	17	8	55	1.67
554558--554604	20	2.3	20	89	10	78	17	17	10	55	1.69
554670--555118	229	2.0	227	94	1	783	39	7	8	45	1.61
556030--556059	11	2.6	12	89	10	53	33	0	0	66	0.92
559557--559607	26	2.0	26	100	0	102	43	11	5	39	1.66
571736--571794	28	2.1	28	96	0	109	27	15	20	37	1.92
572511--572547	17	2.1	18	90	5	58	54	0	8	37	1.30

Tables:   1   2

The End!