genome.fa.s8683.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008683.1 Hibiscus syriacus cultivar Beakdansim tig00111705_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64854

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
453--607	51	3.0	52	96	3	287	38	1	25	34	1.67
3655--4213	291	1.9	291	86	2	793	27	16	22	33	1.95
8318--8425	29	3.7	29	94	1	180	20	16	13	49	1.80
10531--10557	3	9.0	3	100	0	54	0	33	0	66	0.92
15212--16325	302	3.7	304	80	6	1189	35	21	16	27	1.94
18375--18415	2	20.5	2	100	0	82	48	0	0	51	1.00
18801--18893	21	4.6	20	78	4	96	38	18	24	18	1.92
18798--18893	41	2.3	41	98	0	183	39	17	23	18	1.92
18801--18893	20	4.6	20	78	4	96	38	18	24	18	1.92
18820--18954	41	3.3	41	81	6	123	37	20	21	20	1.94
18882--18976	20	4.7	20	80	2	91	34	24	17	23	1.96
19164--19207	22	2.0	22	95	0	79	20	45	15	18	1.85
20827--20871	18	2.5	18	85	0	63	26	42	15	15	1.87
21345--21397	20	2.7	20	87	0	79	37	26	22	13	1.91
21345--21414	20	3.6	19	82	5	77	38	24	22	14	1.91
21470--21516	20	2.4	19	82	6	58	19	27	19	34	1.96
21421--21524	19	5.7	19	72	18	87	13	22	23	41	1.89
24078--24136	24	2.5	24	82	0	73	28	16	18	35	1.93
24311--24335	12	2.1	12	100	0	50	72	0	28	0	0.86
26630--26727	19	5.7	19	69	22	90	43	19	24	12	1.85
26630--26723	33	2.8	33	98	0	179	43	19	24	12	1.85
26723--26765	20	2.2	20	87	4	61	16	18	23	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26751--26784	14	2.4	14	85	0	50	8	23	20	47	1.78
26906--26942	14	2.6	14	91	0	65	45	24	0	29	1.53
28300--28366	21	3.2	21	68	4	55	19	20	35	23	1.95
28300--28422	42	2.9	41	80	7	113	22	17	36	22	1.95
30422--30601	19	9.8	19	74	14	119	43	22	21	12	1.86
30517--30606	19	4.7	19	94	2	144	45	22	18	13	1.84
30422--30606	33	5.1	38	80	10	165	43	22	21	12	1.86
30602--30646	19	2.4	19	92	0	72	8	15	26	48	1.74
31200--31293	20	4.7	20	77	2	80	23	17	24	35	1.95
31282--31377	41	2.3	41	96	3	140	18	25	17	38	1.93
31282--31374	20	4.6	20	78	4	96	18	25	18	37	1.93
43796--43825	2	15.0	2	100	0	60	50	0	0	50	1.00
45193--45337	73	2.0	73	95	0	263	48	0	23	28	1.51
53711--53785	35	2.1	35	85	2	96	34	16	33	16	1.90
54055--54098	21	2.0	21	82	4	52	45	0	0	54	0.99
55499--55538	22	1.9	21	90	10	64	30	20	22	27	1.98
55579--55634	23	2.4	23	93	0	94	42	21	17	17	1.89
62066--62112	12	3.9	12	94	0	76	36	2	23	38	1.67
62256--62302	15	3.1	15	93	0	85	14	17	31	36	1.90
62256--62316	30	1.9	30	87	9	86	16	16	32	34	1.91

Tables:   1

The End!