genome.fa.s8690.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008690.1 Hibiscus syriacus cultivar Beakdansim tig00111718_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  531595

Tables:   1   2   3   

This is table  1  of  3  ( 276 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5790--6077	117	2.5	117	91	1	470	32	31	15	19	1.94
7006--7194	28	6.6	29	76	5	152	45	16	4	32	1.69
7005--7188	29	6.4	28	75	10	122	46	15	4	33	1.66
7006--7194	85	2.2	87	80	3	222	45	16	4	32	1.69
7933--7959	3	9.0	3	100	0	54	33	0	0	66	0.92
8348--8374	10	2.7	10	100	0	54	85	7	0	7	0.75
14145--14191	24	1.9	25	83	12	62	51	2	0	46	1.13
14150--14206	29	2.0	29	83	10	73	47	1	1	49	1.22
14145--14199	24	2.2	24	81	15	60	45	1	1	50	1.22
23885--23918	2	17.0	2	100	0	68	50	0	0	50	1.00
24109--24147	20	1.9	21	94	5	71	46	25	15	12	1.81
24171--24645	171	2.7	174	84	5	625	45	11	13	29	1.79
24785--26069	199	6.5	199	92	1	2018	42	14	14	28	1.86
24785--26069	397	3.2	397	91	2	2041	42	14	14	28	1.86
24785--26069	596	2.2	590	93	1	2176	42	14	14	28	1.86
26423--26464	15	2.8	15	85	0	57	19	50	2	28	1.60
29036--29081	21	2.2	21	84	0	56	45	17	15	21	1.85
29052--30363	199	6.6	200	87	2	1917	42	15	14	27	1.86
29052--30448	397	3.6	398	90	2	2217	42	15	14	28	1.86
31299--31386	23	3.8	23	75	14	99	30	26	25	18	1.98
36239--36280	23	2.0	21	86	13	59	33	16	7	42	1.75
37876--37963	23	3.8	23	75	14	99	32	26	22	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39862--39902	21	2.0	21	85	0	55	46	17	12	24	1.82
42293--43002	198	3.6	196	81	5	761	39	14	14	30	1.87
43564--43603	2	20.0	2	100	0	80	50	0	0	50	1.00
43498--43964	158	2.9	156	78	11	498	46	5	8	39	1.59
44272--44296	7	3.6	7	100	0	50	56	0	0	44	0.99
44394--44459	24	2.7	25	84	9	75	56	0	4	39	1.20
47791--47823	17	2.0	17	88	5	50	36	3	0	60	1.12
54108--54167	27	2.2	27	96	0	111	35	26	11	26	1.91
57764--57841	23	3.4	23	87	3	113	17	23	26	32	1.97
57767--57859	23	4.0	24	82	9	81	20	23	25	30	1.99
59871--59925	20	2.8	20	80	8	67	25	14	20	40	1.90
62337--62371	7	5.0	7	100	0	70	28	42	0	28	1.56
65964--66017	12	4.5	11	81	9	54	25	11	1	61	1.40
65964--66004	12	3.3	12	87	12	57	26	9	0	63	1.25
65964--66012	25	2.0	24	84	11	64	22	12	0	65	1.26
66586--66724	20	6.9	20	71	6	93	32	20	7	39	1.81
67990--68021	2	16.0	2	100	0	64	50	0	0	50	1.00
70565--70620	28	2.0	28	92	0	94	41	19	7	32	1.79
71881--71920	12	3.6	12	83	12	50	45	5	0	50	1.23
71907--72225	22	14.6	21	90	4	451	39	0	10	50	1.39
72249--72307	31	1.9	31	89	0	91	45	6	5	42	1.52
72697--72745	22	2.2	21	85	7	62	69	2	0	28	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72708--72756	22	2.2	22	85	7	64	69	2	2	26	1.10
72783--72816	14	2.4	14	95	0	59	29	0	2	67	1.05
73149--73200	20	2.6	20	81	6	61	26	0	3	69	1.06
73707--73746	21	1.9	22	90	10	66	32	15	5	47	1.66
73706--73753	21	2.4	18	81	18	60	33	12	4	50	1.59
85639--85690	21	2.5	21	81	3	61	38	19	25	17	1.93
85679--85779	20	5.0	20	80	7	105	32	24	17	24	1.97
85676--85792	61	1.9	61	83	0	153	34	24	17	23	1.96
85741--85793	20	2.7	20	90	0	79	26	28	18	26	1.98
86325--86384	19	3.1	19	83	4	75	13	23	18	45	1.84
87016--87096	22	3.6	22	96	1	144	24	29	27	18	1.98
87030--87092	10	5.5	13	65	27	52	26	26	26	19	1.99
87398--87469	29	2.5	29	93	0	117	38	12	9	38	1.76
87772--87921	66	2.3	65	89	3	219	18	26	28	28	1.98
87901--87943	21	2.0	21	86	0	59	16	25	27	30	1.97
87773--87946	65	2.6	64	83	9	197	18	26	27	28	1.98
93988--94068	22	3.6	22	96	1	144	24	29	27	18	1.98
94002--94064	10	5.5	13	65	27	52	26	26	26	19	1.99
94370--94441	29	2.5	29	93	0	117	38	12	9	38	1.76
94874--94916	21	2.0	21	86	0	59	16	25	27	30	1.97
94745--94894	67	2.2	67	89	4	223	18	26	27	28	1.98
97040--97170	63	2.1	63	97	0	244	22	18	35	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97743--97945	42	4.8	42	77	1	183	22	35	17	23	1.95
97740--97915	84	2.1	84	96	0	325	21	36	17	24	1.94
97740--97945	84	2.5	84	91	1	288	22	35	17	23	1.95
99303--99338	14	2.6	14	95	0	63	30	0	25	44	1.54
99479--99549	33	2.2	33	82	5	81	18	23	19	38	1.93
99498--99552	19	3.2	19	70	24	66	12	21	18	47	1.82
101848--101872	12	2.1	12	100	0	50	0	28	0	72	0.86
102047--102100	24	2.2	24	90	0	81	40	20	16	22	1.91
102845--102895	20	2.5	20	96	0	93	29	19	29	21	1.98
103110--103158	20	2.5	20	86	0	71	34	22	26	16	1.95
103108--103165	20	2.9	19	76	5	62	37	22	22	17	1.93
103184--103248	19	3.7	19	84	13	86	15	21	16	46	1.84
103254--103292	20	2.0	20	94	0	69	12	10	30	46	1.75
105265--105350	20	4.3	20	89	0	82	38	25	20	15	1.92
105284--105359	40	1.9	39	86	2	107	35	23	25	15	1.94
105360--105417	14	3.9	14	79	16	71	48	24	15	12	1.79
105344--105433	32	2.8	32	89	3	135	46	24	16	12	1.81
105429--105543	19	6.6	19	78	17	126	13	20	20	46	1.83
105451--105508	14	3.9	14	79	16	71	10	17	24	48	1.78
105434--105527	32	2.9	33	95	3	172	11	18	21	48	1.79
105508--105571	19	3.3	19	86	2	83	17	23	18	40	1.91
105509--105582	20	3.8	19	83	5	67	16	22	21	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106064--106108	18	2.5	18	88	0	72	13	15	44	26	1.83
107428--107501	20	3.8	20	81	1	69	43	22	17	16	1.88
107925--108038	41	2.8	41	82	4	142	23	17	23	35	1.95
107986--108039	20	2.7	20	97	0	99	25	18	24	31	1.97
107925--108042	61	1.9	62	86	5	168	22	16	22	37	1.94
107925--108060	61	2.2	61	81	6	150	22	19	22	36	1.95
108110--108150	21	2.0	21	85	0	55	34	31	17	17	1.93
114220--114279	24	2.5	24	86	5	77	31	1	6	60	1.33
114445--114500	23	2.4	23	100	0	112	48	19	16	16	1.82
114697--114739	17	2.4	18	88	3	61	30	23	13	32	1.93
124858--124897	21	2.0	19	85	9	53	35	10	2	52	1.48
127469--127503	17	2.1	17	89	5	54	57	11	14	17	1.66
142304--142473	45	3.8	45	89	1	250	29	21	8	41	1.82
147965--148004	21	1.9	21	84	0	53	40	2	0	57	1.12
153495--153571	14	5.6	13	70	21	50	15	15	10	58	1.63
158667--158735	23	3.3	23	61	23	60	31	14	14	39	1.86
158646--158839	40	4.8	40	91	1	291	30	17	12	39	1.86
159169--159510	136	2.5	136	90	1	535	35	16	22	25	1.95
159445--159508	20	3.2	20	66	18	53	43	12	21	21	1.86
159293--159827	228	2.4	228	87	0	759	37	17	20	25	1.94
159660--159829	91	1.9	91	94	0	304	42	15	17	24	1.88
161814--161847	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
173791--173828	18	2.1	18	100	0	76	31	10	10	47	1.72
177508--177550	23	1.9	22	90	4	68	48	27	0	23	1.51
177801--177895	31	3.0	30	78	4	82	51	12	5	30	1.62
179214--179306	45	2.1	45	97	0	177	33	13	22	30	1.93
186366--186404	20	2.0	20	85	10	53	15	2	12	69	1.30
192278--192318	14	2.9	14	80	20	50	19	9	0	70	1.14
196095--196198	31	3.4	30	85	7	149	22	19	21	37	1.94
200608--200714	31	3.5	31	93	0	178	22	17	20	39	1.93
200608--200730	31	4.0	31	89	0	129	22	17	21	39	1.93
201242--201283	21	2.0	21	95	0	75	30	19	21	28	1.97

Tables:   1   2   3