genome.fa.s8690.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008690.1 Hibiscus syriacus cultivar Beakdansim tig00111718_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  531595

Tables:   1   2   3   

This is table  3  of  3  ( 276 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
499874--499959	19	4.5	19	88	4	120	41	23	20	13	1.88
499856--499959	39	2.7	38	76	5	111	42	24	19	14	1.88
499873--499978	19	5.9	18	81	12	112	44	23	19	12	1.85
500007--500064	14	3.9	14	77	16	62	12	17	22	48	1.80
499990--500080	32	2.8	33	93	3	157	13	18	20	47	1.82
500065--500119	20	2.8	19	83	8	65	16	23	23	36	1.94
500601--500645	18	2.5	18	88	0	72	13	15	44	26	1.83
501963--502005	20	2.2	20	95	0	77	53	18	18	9	1.70
502283--502326	22	2.0	22	95	0	79	22	15	40	20	1.90
502515--502587	20	3.7	20	85	7	103	26	19	28	26	1.98
502582--502669	20	4.3	19	75	12	77	18	20	17	44	1.87
502598--502669	20	3.5	20	81	3	99	18	23	18	40	1.91
508265--508307	20	2.2	20	100	0	86	13	25	16	44	1.85
508269--508316	20	2.4	20	92	0	78	16	20	18	43	1.88
508269--508322	20	2.7	20	88	0	54	18	22	18	40	1.91
509429--509537	43	2.6	41	84	5	164	40	20	17	22	1.91
509509--509556	19	2.5	19	100	0	96	41	18	20	18	1.90
509466--509597	60	2.1	62	86	4	178	41	20	17	20	1.90
509509--509598	19	4.5	20	82	6	76	42	22	18	16	1.89
509566--509682	41	2.9	41	94	0	207	39	23	18	17	1.92
509589--509662	21	3.6	21	74	3	87	33	25	18	21	1.96
509522--509683	20	7.9	20	70	10	96	40	22	19	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
510255--510285	3	10.0	3	93	6	53	64	0	32	3	1.09
512624--512718	32	3.0	32	84	1	129	33	10	10	45	1.73
512778--512858	32	2.5	32	84	6	101	34	13	9	41	1.78
512656--513102	142	3.2	139	82	5	510	36	17	7	39	1.77
512928--512993	32	2.1	32	85	5	89	36	13	6	43	1.69
520671--520707	19	1.9	19	100	0	74	37	5	16	40	1.71
523404--523443	17	2.4	17	86	0	53	27	25	35	12	1.92
524338--524464	62	2.0	62	98	0	245	38	21	17	22	1.93
524173--524638	237	2.0	226	93	4	797	29	22	13	34	1.93
525246--525401	31	5.0	31	94	1	260	38	23	18	19	1.93
529494--529603	31	3.6	31	87	3	161	40	23	15	20	1.90
531297--531350	3	18.3	3	88	11	85	0	35	0	64	0.94
531448--531520	3	24.3	3	90	8	105	0	30	0	69	0.88
531452--531519	11	6.0	11	89	8	93	0	27	0	72	0.85

Tables:   1   2   3

The End!