Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008723.1 Hibiscus syriacus cultivar Beakdansim tig00111781_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55934

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
862--914
20
2.7
20
71
11
54
11
5
7
75
1.18
788--925
22
6.7
20
64
19
52
17
6
5
71
1.26
852--956
40
2.7
38
77
16
108
19
3
4
72
1.18
907--964
23
2.5
23
81
13
66
24
1
3
70
1.12
1221--1285
30
2.3
27
80
17
69
10
9
3
76
1.11
1268--1362
42
2.3
43
82
8
108
18
7
2
71
1.19
1310--1360
20
2.7
20
84
6
70
19
5
0
74
1.02
1310--1367
20
3.0
20
78
12
66
18
8
0
72
1.10
2175--2233
25
2.3
26
94
2
102
30
8
23
37
1.85
2580--2695
58
2.0
58
94
0
205
34
16
24
25
1.95
3984--4025
21
2.0
21
90
4
68
23
21
30
23
1.99
3991--4035
21
2.0
21
83
8
54
28
22
28
20
1.98
7749--7778
2
15.0
2
100
0
60
50
0
0
50
1.00
8379--8449
29
2.4
30
84
11
92
50
2
0
46
1.16
8418--8526
41
2.8
40
70
13
100
47
0
2
49
1.15
8422--8525
19
5.3
19
68
22
65
48
0
2
49
1.16
8507--8551
22
2.0
22
87
8
65
60
0
0
40
0.97
8413--8567
78
2.0
79
80
11
176
49
0
1
47
1.17
14820--14858
16
2.4
16
86
0
60
48
7
17
25
1.74
15459--15542
29
2.9
29
78
8
107
47
27
10
14
1.77
16654--16682
14
2.0
15
93
6
51
75
0
17
6
1.01
20954--20988
18
2.0
17
94
5
61
54
0
28
17
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21665--21689
9
2.8
9
100
0
50
88
0
0
12
0.53
21956--21999
23
2.0
22
86
4
61
65
0
4
29
1.12
23983--24441
105
4.4
105
98
0
882
22
17
24
35
1.95
25191--25287
51
1.9
51
86
0
140
15
21
14
48
1.80
34669--34712
20
2.2
20
88
8
63
72
2
6
18
1.17
38137--38165
13
2.2
13
100
0
58
27
0
6
65
1.18
39290--39322
17
1.9
17
93
0
57
39
3
6
51
1.42
40612--40662
23
2.2
23
85
0
75
37
7
19
35
1.81
40662--40924
131
2.0
131
91
0
427
41
12
11
34
1.79
40892--40943
23
2.3
23
75
0
59
38
7
15
38
1.76
40796--41086
157
1.8
158
87
0
431
41
11
12
34
1.79
41155--41390
72
3.2
72
86
4
332
39
12
12
35
1.81
41663--41713
3
16.7
3
83
4
66
35
1
0
62
1.06
46848--46881
11
2.8
12
86
13
52
61
0
23
14
1.33
46871--46921
22
2.3
22
86
10
68
78
0
17
3
0.90
46871--46921
23
2.3
22
86
10
68
78
0
17
3
0.90
48067--48841
66
11.8
66
94
1
1337
30
20
17
31
1.96
48774--49242
111
4.2
111
88
1
636
30
21
17
30
1.96
49443--49490
3
15.3
3
87
8
69
33
2
0
64
1.05
51293--51332
19
2.2
18
86
4
53
30
5
0
65
1.14
51301--51358
30
2.0
29
83
10
73
27
8
3
60
1.42

Tables:   1

The End!