genome.fa.s8731.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008731.1 Hibiscus syriacus cultivar Beakdansim tig00111801_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87216

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2698--2750	15	3.5	15	89	2	70	56	13	22	7	1.62
5367--5408	21	2.0	21	100	0	84	42	19	19	19	1.89
8588--8828	85	2.8	85	94	0	410	31	17	21	29	1.96
12298--12342	12	3.9	12	85	8	67	17	51	17	13	1.77
12297--12344	17	2.9	16	74	20	53	18	50	18	12	1.78
12360--12522	29	5.7	28	83	5	200	31	5	23	39	1.77
12376--12542	58	2.9	57	83	6	210	32	5	21	40	1.78
12390--12542	29	5.3	29	84	6	152	31	5	22	40	1.78
19778--19868	27	3.3	27	73	11	85	20	15	14	49	1.79
20438--26110	659	8.6	659	90	0	8775	36	16	16	31	1.90
25581--26636	526	2.0	525	90	1	1641	36	14	15	33	1.88
26106--30906	658	7.3	657	89	2	7150	36	16	15	31	1.90
36216--36298	39	2.1	39	100	0	166	42	12	9	36	1.75
35557--36955	696	2.0	698	90	1	2236	36	15	15	32	1.90
33270--38558	659	8.0	658	88	2	7764	36	16	15	31	1.90
38014--39102	544	2.0	544	90	2	1722	35	15	15	33	1.90
38554--41748	658	4.9	658	91	1	4928	35	16	15	32	1.90
42269--52433	659	15.4	659	91	1	16050	36	16	15	31	1.90
53475--53516	21	2.0	21	100	0	84	42	19	19	19	1.89
56597--56928	85	3.8	87	84	8	408	33	16	19	30	1.95
56688--56928	85	2.8	85	94	0	410	31	17	21	29	1.96
60014--60093	39	2.1	39	100	0	160	32	12	23	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61102--61227	24	5.2	24	80	9	98	21	14	19	45	1.85
61095--61227	48	2.8	47	79	6	135	21	14	18	45	1.85
62436--62467	11	3.1	11	91	8	50	21	18	25	34	1.96
62568--62689	29	4.2	29	84	8	149	31	5	21	40	1.77
62568--62689	59	2.1	58	86	7	167	31	5	21	40	1.77
62547--62689	29	4.9	29	81	6	146	32	5	21	39	1.77
69758--69813	12	4.9	12	82	10	73	17	50	19	12	1.78
69836--70014	29	6.2	28	83	5	196	32	5	20	41	1.75
69847--70014	87	1.9	88	86	8	245	32	5	20	40	1.77
77256--77346	27	3.3	27	73	11	85	20	15	14	49	1.79
77917--87216	659	14.3	659	89	2	13905	36	16	16	31	1.91

Tables:   1

The End!