genome.fa.s8734.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008734.1 Hibiscus syriacus cultivar Beakdansim tig00111807_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  415630

Tables:   1   2   

This is table  2  of  2  ( 212 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
276228--276276	23	2.1	23	96	0	89	24	16	14	44	1.84
276262--276615	99	3.6	98	83	4	408	37	14	9	38	1.79
276262--276615	98	3.6	99	84	4	412	37	14	9	38	1.79
276264--276652	100	3.9	99	80	7	398	36	14	9	38	1.79
276732--277014	132	2.1	135	83	7	346	37	13	9	39	1.78
276914--276957	20	2.3	18	85	11	61	40	11	9	38	1.73
276914--276957	19	2.3	19	88	7	63	40	11	9	38	1.73
277000--277036	19	1.9	19	88	0	56	40	8	21	29	1.82
277115--277446	77	4.3	76	83	4	382	37	15	9	37	1.80
277115--277483	154	2.4	153	81	5	424	37	15	8	37	1.80
277115--277483	77	4.8	77	80	5	347	37	15	8	37	1.80
281494--281560	22	3.2	21	71	12	57	20	22	20	35	1.96
281549--281660	20	5.6	20	84	2	145	34	18	21	25	1.96
281546--281680	20	6.7	21	81	7	138	33	20	20	25	1.97
281545--281680	60	2.3	60	83	5	184	33	20	21	25	1.97
281545--281680	40	3.4	40	81	6	159	33	20	21	25	1.97
282478--282531	24	2.2	24	90	0	81	22	16	20	40	1.91
282721--282757	14	2.6	14	91	4	56	51	21	21	5	1.68
284795--284829	18	1.9	18	94	0	61	54	25	2	17	1.57
285007--285355	20	18.6	20	72	16	185	37	20	19	21	1.94
285071--285180	34	3.2	34	93	0	175	40	18	20	20	1.92
285086--285217	54	2.4	55	74	10	137	39	18	21	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
285490--285569	30	2.4	34	80	20	114	55	15	3	26	1.57
285505--285570	30	2.2	30	100	0	132	54	13	3	28	1.54
286956--287036	21	3.9	21	70	6	74	24	18	33	23	1.97
286971--287051	42	1.9	42	85	5	110	23	16	37	23	1.94
287518--287563	20	2.4	18	80	13	56	41	28	15	15	1.87
287608--287674	20	3.3	20	91	0	98	17	20	25	35	1.95
287822--287871	18	2.8	18	100	0	100	42	6	20	32	1.76
289587--289713	20	6.7	20	82	10	124	38	24	19	17	1.93
289647--289711	33	1.9	34	87	3	96	35	26	23	15	1.94
290109--290162	22	2.5	22	84	0	81	16	18	42	22	1.89
290326--290520	20	9.6	20	69	8	72	30	18	22	28	1.98
291710--291769	29	2.1	29	93	6	104	35	6	10	48	1.63
294070--294141	35	2.1	35	100	0	144	30	16	15	37	1.90
299030--299133	6	17.2	6	88	5	120	49	24	0	26	1.51
303059--303101	22	2.0	22	86	4	61	18	11	27	41	1.85
306890--306949	26	2.3	26	78	16	70	13	8	3	75	1.16
313627--313689	30	2.1	30	82	11	76	38	7	22	31	1.83
313791--313860	18	3.9	18	94	0	122	18	21	31	28	1.97
316692--316721	15	2.0	15	93	0	51	13	6	23	56	1.60
318074--318124	18	2.9	18	97	2	95	15	23	33	27	1.95
319483--319639	80	2.0	78	97	2	296	18	15	3	62	1.47
322131--322205	21	3.4	22	71	18	66	29	28	4	38	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
322135--322216	24	3.5	24	77	15	91	32	25	4	36	1.77
322133--322218	45	1.9	45	92	0	145	32	25	4	37	1.77
322128--322229	45	2.3	45	84	0	132	30	29	4	35	1.79
324407--324431	3	8.3	3	100	0	50	68	32	0	0	0.90
332334--332417	38	2.2	37	89	6	132	50	10	11	27	1.72
333350--333435	27	3.4	26	66	21	74	16	2	19	61	1.45
344047--344090	21	2.1	21	82	0	52	9	38	15	36	1.80
345191--345370	64	2.8	63	79	9	193	30	23	17	28	1.97
346300--346359	11	5.4	11	84	4	66	20	1	11	66	1.31
346300--346359	23	2.7	22	81	2	66	20	1	11	66	1.31
346300--346363	34	1.9	33	90	3	101	18	1	14	65	1.34
346323--346365	11	3.9	11	87	0	50	18	4	13	62	1.48
346420--346451	11	2.9	11	95	0	55	15	0	15	68	1.21
346500--346552	11	4.7	11	80	2	52	16	1	16	64	1.39
346597--346637	11	3.7	11	83	0	55	14	4	19	60	1.51
346512--346786	85	3.1	85	82	11	352	21	4	16	57	1.56
346597--346639	22	2.0	22	90	0	68	13	4	18	62	1.48
346597--346795	97	2.1	97	93	0	335	21	4	16	57	1.55
347769--347828	28	2.1	28	84	3	75	16	11	23	48	1.79
348237--348332	35	2.7	35	91	0	156	33	2	22	41	1.66
350741--350896	77	2.0	78	95	5	280	23	13	28	33	1.93
355461--355522	30	2.1	30	100	0	124	27	9	32	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
361181--361249	36	1.9	36	93	0	120	39	17	8	34	1.80
362798--362862	26	2.5	26	97	0	121	12	13	20	53	1.71
365147--365192	19	2.5	18	82	6	65	73	2	13	10	1.17
365189--365372	9	19.9	9	65	26	66	71	2	7	19	1.21
365142--365233	19	4.8	19	72	16	57	70	1	10	17	1.21
365188--365281	34	2.9	32	72	12	86	71	2	5	21	1.17
365323--365381	13	4.7	12	76	21	50	76	0	3	20	0.93
365340--365372	17	1.9	17	88	11	50	78	0	3	18	0.87
365495--365521	11	2.5	11	100	0	54	66	0	0	33	0.92
367464--368675	84	14.4	84	84	0	1424	25	17	23	34	1.96
367464--368677	503	2.4	502	87	2	1662	25	17	22	34	1.96
369825--370046	95	2.5	86	80	11	259	31	20	17	30	1.95
369873--370073	95	2.1	95	93	0	339	32	19	14	32	1.92
372745--372814	18	3.8	19	80	10	74	72	0	12	14	1.11
372707--372833	9	13.8	9	69	13	62	72	2	10	14	1.21
372905--372970	12	5.2	12	73	24	55	77	0	4	18	0.94
373069--373094	11	2.4	11	100	0	52	73	0	0	26	0.84
373106--373154	25	1.9	26	83	4	64	65	8	2	24	1.31
373080--373145	18	3.6	17	74	22	55	66	4	1	27	1.20
373206--373284	2	39.5	2	100	0	158	50	0	0	49	1.00
374683--374868	90	2.1	91	97	1	356	34	11	11	43	1.76
378520--378630	45	2.3	47	86	7	163	47	17	13	21	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
381651--381676	13	2.0	13	100	0	52	38	7	7	46	1.61
382054--382107	2	28.5	2	89	10	87	51	0	0	48	1.00
387487--387542	28	2.0	28	89	3	87	28	1	14	55	1.49
393125--393160	14	2.5	15	90	4	56	25	30	22	22	1.99

Tables:   1   2

The End!