genome.fa.s8744.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008744.1 Hibiscus syriacus cultivar Beakdansim tig00111833_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  364351

Tables:   1   2   

This is table  1  of  2  ( 208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10144--10188	18	2.6	18	89	6	67	31	6	11	51	1.63
10955--11266	84	3.7	84	97	0	583	27	13	21	37	1.91
11995--12672	113	6.0	113	92	2	1013	36	14	19	29	1.91
12991--13098	3	35.7	3	94	1	189	36	0	0	63	0.94
13540--13574	18	1.9	18	88	0	52	45	14	40	0	1.45
13563--13597	18	1.9	18	100	0	70	68	5	25	0	1.11
17791--17817	7	3.9	7	100	0	54	59	11	0	29	1.32
18032--18066	17	2.1	17	94	0	61	54	5	0	40	1.24
20718--20744	12	2.2	12	100	0	54	59	7	7	25	1.51
20862--20894	15	2.2	15	94	0	57	6	9	69	15	1.34
23877--23925	21	2.3	21	89	0	80	53	20	4	22	1.63
25840--25890	25	2.1	25	92	3	86	62	3	11	21	1.45
26670--26731	22	2.8	23	85	4	83	56	12	11	19	1.66
29715--29746	2	16.0	2	100	0	64	50	0	0	50	1.00
30608--30640	16	2.1	16	94	5	59	48	0	0	51	1.00
40353--40496	75	1.9	76	87	4	211	47	13	12	27	1.78
41588--41657	35	2.0	35	91	0	113	25	15	8	50	1.73
44604--44707	49	2.1	49	89	0	154	30	11	20	37	1.88
55269--55391	61	2.0	61	98	0	237	39	21	9	28	1.85
55389--55462	23	3.2	23	78	1	67	48	17	9	24	1.76
57073--57109	12	3.0	13	88	11	60	40	0	0	59	0.97
57076--57116	12	3.4	12	83	12	57	41	2	0	56	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57512--57544	12	2.7	13	90	9	52	57	6	0	36	1.23
57511--57548	13	2.7	15	80	19	55	55	5	0	39	1.23
61426--61465	21	1.9	21	89	0	62	30	15	17	37	1.90
61426--61473	21	2.3	21	81	0	60	33	18	14	33	1.91
63658--63729	30	2.4	30	88	0	99	33	22	19	25	1.97
63715--63840	31	4.0	31	78	11	123	31	18	19	30	1.96
64756--64813	20	2.6	22	81	10	66	24	20	20	34	1.97
64864--64909	17	2.6	17	89	3	65	23	28	19	28	1.98
64801--64939	61	2.2	62	82	7	174	25	23	17	32	1.97
67171--67223	21	2.5	21	90	0	88	33	15	15	35	1.88
67214--67305	41	2.2	41	92	0	148	33	22	20	22	1.97
67234--67306	21	3.5	21	67	23	64	30	24	20	24	1.99
70587--70611	4	6.2	4	100	0	50	24	0	0	76	0.80
72131--72158	11	2.5	11	100	0	56	25	0	7	67	1.15
73221--73309	45	1.9	48	84	11	123	35	13	22	28	1.92
77121--77175	18	2.9	20	79	17	64	78	0	18	3	0.90
77129--77181	16	3.1	17	91	5	81	83	0	15	1	0.74
77135--77184	8	6.0	8	90	9	82	84	0	16	0	0.63
77657--77749	17	5.5	17	79	12	102	77	0	22	0	0.77
77657--77752	26	3.8	25	79	14	92	78	0	21	0	0.76
77657--77752	43	2.3	43	84	10	135	78	0	21	0	0.76
79287--79414	52	2.5	50	83	5	159	40	19	17	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80500--81050	249	2.2	248	91	3	878	31	15	17	35	1.91
80832--81272	217	2.0	220	92	2	744	29	16	18	35	1.93
81514--81655	47	3.0	47	96	1	259	29	22	19	28	1.98
85346--85407	20	2.9	21	85	9	72	19	25	33	20	1.96
95054--95107	12	4.5	12	78	0	63	12	12	48	25	1.78
95106--95207	32	3.2	32	78	12	102	47	0	0	52	1.00
95209--95240	12	2.5	13	90	10	57	15	15	46	21	1.83
95474--95508	17	2.1	17	94	0	61	25	0	0	74	0.82
95474--95514	13	3.2	13	83	10	50	29	0	0	70	0.87
101897--101964	21	3.1	21	76	21	61	72	0	2	25	0.99
102616--102720	37	2.8	37	85	0	138	29	14	14	41	1.85
103263--103893	105	6.0	105	90	3	916	22	17	26	33	1.96
104100--104168	36	1.9	36	90	0	111	40	15	20	23	1.91
104065--104438	106	3.8	106	84	9	465	35	12	22	30	1.91
104499--104612	36	3.2	35	72	2	102	44	13	16	25	1.84
104487--104628	72	2.0	73	86	6	200	41	11	18	28	1.86
105706--106088	192	2.0	189	92	1	640	31	19	18	30	1.96
110180--110209	2	15.0	2	92	0	51	53	0	0	46	1.00
110709--110751	18	2.5	17	85	7	61	67	2	4	25	1.22
110637--110759	62	2.0	59	80	12	133	60	3	3	32	1.28
111108--111212	37	2.8	37	85	0	138	29	14	14	41	1.85
117370--117692	21	15.6	20	84	7	264	22	20	21	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117459--117692	42	5.6	41	90	3	319	22	22	20	34	1.97
117459--117689	63	3.7	63	91	2	383	22	22	21	34	1.97
118808--119099	21	14.0	21	72	18	211	35	21	20	21	1.96
118812--119089	42	6.7	41	88	4	284	35	21	20	21	1.96
118913--119108	61	3.2	60	75	11	155	35	22	19	21	1.96
119471--119524	25	2.2	25	83	3	65	62	1	0	35	1.06
125200--125286	31	2.8	31	85	5	113	60	5	12	20	1.52
130563--130633	30	2.4	30	88	4	99	38	14	28	19	1.91
130742--130783	15	2.8	15	82	10	59	45	0	0	54	0.99
131076--131206	58	2.2	60	82	8	153	42	4	22	30	1.73
134499--134533	2	17.5	2	100	0	70	0	51	0	48	1.00
152053--152124	3	24.0	3	83	10	85	40	0	0	59	0.97
153387--153444	12	4.8	12	78	0	62	51	18	13	15	1.76
153399--153481	24	3.5	24	78	3	87	44	18	16	20	1.87
155951--155995	7	6.4	7	80	19	58	24	26	35	13	1.92
155952--156029	8	10.5	8	71	23	64	19	24	41	15	1.90
155952--155998	15	3.3	15	94	5	80	23	25	36	14	1.93
155959--156003	13	3.3	13	90	6	63	20	24	40	15	1.91
155974--156038	31	2.1	31	97	0	121	13	21	47	16	1.82
155998--156034	13	2.8	13	100	0	74	10	24	48	16	1.77
155980--156022	18	2.4	18	92	0	77	13	23	46	16	1.83
159195--159235	7	5.9	7	83	11	57	14	17	9	58	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
167032--167311	144	1.9	147	92	2	476	32	16	12	38	1.86
167034--167311	73	3.8	73	92	3	454	32	16	12	38	1.86
167481--167711	76	3.0	76	94	0	399	24	20	21	34	1.97
167709--168008	113	2.7	113	93	1	505	39	15	20	25	1.91
167953--168044	39	2.3	40	94	1	159	47	8	22	20	1.77
167836--168155	147	2.2	149	83	10	390	40	12	19	26	1.88
168523--168579	3	19.0	3	82	13	73	38	0	0	61	0.96
172558--172593	2	18.0	2	100	0	72	50	0	0	50	1.00
173164--173247	42	2.0	42	95	0	150	47	15	8	28	1.74
174281--174354	20	3.9	19	75	22	68	28	17	28	25	1.98
174303--174353	16	2.9	17	78	21	52	27	19	27	25	1.99
174283--174453	36	5.0	36	69	15	137	26	17	28	27	1.98
174393--174454	20	3.3	19	72	25	60	24	20	27	27	1.99
174917--174986	34	2.1	32	86	5	95	22	30	15	31	1.95
175268--175310	21	2.0	21	95	0	77	27	27	20	23	1.99
175346--175385	21	2.0	21	95	5	73	12	30	45	12	1.79
175447--175476	15	2.0	15	100	0	60	13	26	33	26	1.93
175425--175498	37	2.0	37	89	5	114	13	28	35	22	1.92
175593--175651	29	2.0	31	93	6	104	44	16	3	35	1.65
178255--178324	34	2.1	32	86	5	95	22	30	15	31	1.95
178539--178578	21	1.9	22	90	10	66	12	10	40	37	1.77
178606--178648	21	2.0	21	95	0	77	27	27	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
178739--178851	20	6.1	20	77	20	129	13	28	34	23	1.93
178740--178833	35	2.7	35	100	0	188	10	27	37	24	1.88
178760--178824	15	4.0	15	81	18	85	12	27	33	26	1.92
178941--178999	29	2.0	31	93	6	104	44	16	3	35	1.65
181507--181566	20	3.2	20	69	26	58	28	18	26	26	1.98
181514--181566	16	3.1	16	75	24	54	26	16	28	28	1.97
181495--181566	36	2.0	36	91	0	117	27	15	29	27	1.96
181597--181772	36	4.9	36	89	0	244	28	15	27	27	1.96
181597--181773	72	2.5	72	90	0	273	28	15	27	28	1.96
182183--182252	34	2.1	32	86	5	95	24	27	15	32	1.95

Tables:   1   2