genome.fa.s8744.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008744.1 Hibiscus syriacus cultivar Beakdansim tig00111833_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  364351

Tables:   1   2   

This is table  2  of  2  ( 208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
182467--182506	21	1.9	22	90	10	66	12	10	40	37	1.77
182806--182874	29	2.3	30	80	14	88	46	13	4	36	1.62
182817--182875	30	2.0	29	93	3	100	44	13	6	35	1.71
184135--184182	19	2.5	20	82	3	62	29	12	6	52	1.63
185565--185620	21	2.7	21	100	0	112	23	19	35	21	1.96
185689--185751	30	2.1	29	82	11	74	49	11	6	33	1.64
187247--187328	38	2.2	38	82	4	94	32	37	9	19	1.85
192767--192801	17	2.1	17	88	0	52	37	8	2	51	1.47
193116--193163	24	2.0	24	88	4	71	56	0	6	37	1.25
193129--193263	30	4.6	30	78	9	143	51	2	8	37	1.45
193149--193312	89	1.9	88	82	8	208	50	2	9	37	1.49
194234--194272	20	1.9	21	84	5	53	25	2	10	61	1.41
200343--200395	20	2.7	20	90	0	88	26	28	11	33	1.91
201917--201961	23	2.0	23	86	0	63	48	15	11	24	1.77
202805--202863	29	2.0	29	83	12	75	44	8	22	25	1.81
202856--202916	31	2.0	31	87	6	88	44	9	14	31	1.78
204082--204126	20	2.3	20	92	3	74	35	0	22	42	1.54
207739--207781	16	2.6	17	77	3	52	58	0	0	41	0.98
212617--212742	68	1.9	66	88	3	189	30	4	16	48	1.67
212794--212829	19	1.9	19	88	5	56	27	2	5	63	1.30
214938--214980	22	1.9	23	90	4	70	44	11	6	37	1.68
215004--215055	27	1.9	27	88	0	77	40	17	1	40	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
217923--217970	19	2.6	18	83	3	51	52	4	6	37	1.46
217963--218017	24	2.2	24	83	9	65	50	1	0	47	1.11
218051--218145	47	2.0	47	91	0	154	42	9	4	44	1.56
218191--218237	24	2.0	24	82	0	58	55	2	2	40	1.24
218402--218458	25	2.3	24	88	5	71	29	5	3	61	1.35
221098--221156	23	2.6	23	91	0	91	33	16	23	25	1.96
221793--221819	2	13.5	2	100	0	54	48	0	0	51	1.00
224457--224481	2	12.5	2	100	0	50	52	0	0	48	1.00
227369--227418	25	2.0	25	92	0	82	30	26	16	28	1.96
227838--227898	2	30.5	2	100	0	122	49	0	0	50	1.00
241197--241252	28	2.0	28	100	0	112	35	7	17	39	1.78
244163--244220	30	1.9	30	85	0	80	25	29	24	20	1.99
253152--253202	24	2.1	24	85	0	66	50	19	19	9	1.75
253423--253477	2	28.0	2	96	3	103	50	0	0	49	1.00
256260--256295	2	18.0	2	100	0	72	50	0	0	50	1.00
257349--257374	2	13.0	2	100	0	52	50	0	0	50	1.00
258661--258711	26	1.9	27	88	4	77	11	50	11	25	1.72
259641--259670	4	7.5	4	100	0	60	50	0	0	50	1.00
263233--263316	41	2.0	43	81	13	102	55	2	2	39	1.26
263752--263794	22	2.0	21	86	8	61	32	16	25	25	1.96
266575--266620	24	1.9	24	100	0	92	32	15	0	52	1.43
270414--270454	20	2.0	20	100	0	82	29	0	36	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
271506--271534	2	14.5	2	100	0	58	51	0	0	48	1.00
274243--274376	50	2.6	51	86	2	189	47	15	11	24	1.79
274344--274452	54	1.9	57	85	7	152	47	11	13	26	1.78
275200--275267	30	2.3	29	92	5	118	27	5	10	55	1.56
277001--277052	23	2.4	20	81	15	59	67	0	17	15	1.24
277012--277064	12	4.5	11	77	11	52	64	0	18	16	1.30
278240--278273	4	8.2	4	87	6	50	73	0	0	26	0.83
279460--279520	24	2.5	24	89	0	95	11	11	9	67	1.43
279638--279681	20	2.1	21	91	4	72	25	15	4	54	1.60
279670--279696	11	2.5	11	100	0	54	18	11	7	62	1.50
282894--282942	19	2.6	19	100	0	98	22	34	16	26	1.95
284346--284384	18	2.2	18	86	9	53	35	12	5	46	1.65
286862--286952	31	2.9	30	78	15	94	35	17	18	28	1.94
291298--291999	244	2.9	243	81	5	736	37	19	12	29	1.89
293764--293819	21	2.7	21	86	13	64	30	16	3	50	1.62
293779--293823	21	2.1	21	100	0	90	26	13	4	55	1.57
293812--293838	11	2.5	11	100	0	54	18	11	7	62	1.50
300316--300406	31	2.9	32	77	12	107	34	17	18	29	1.94
301165--301224	24	2.5	24	100	0	120	21	20	25	33	1.97
304891--305595	244	2.9	242	83	5	765	37	20	13	28	1.90
311880--311936	17	3.4	17	97	0	105	29	19	21	29	1.97
314622--314668	22	2.1	23	88	4	69	38	25	12	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
316223--316294	28	2.6	29	76	14	78	16	31	4	47	1.66
316981--317402	227	1.9	227	90	6	674	40	18	10	30	1.84
316966--317438	227	2.1	228	83	10	635	40	20	11	28	1.86
319659--319735	31	2.5	30	81	6	82	51	14	5	28	1.63
320916--320982	19	3.5	20	80	11	63	19	23	28	28	1.98
320915--320984	29	2.4	29	83	2	79	20	25	27	27	1.99
320981--321106	22	6.0	22	86	9	190	19	46	23	10	1.80
320980--321106	39	3.1	39	92	5	191	18	46	23	11	1.81
320980--321094	17	6.9	17	72	21	93	19	46	23	10	1.80
328277--328370	10	9.8	9	72	13	62	18	24	27	29	1.98
328277--328315	21	1.9	21	89	5	62	17	25	23	33	1.96
328279--328376	19	5.1	19	76	14	69	16	26	27	29	1.97
328277--328376	29	3.4	30	82	9	109	18	26	27	29	1.98
328373--328498	22	6.0	22	86	9	190	19	46	23	10	1.80
328372--328498	39	3.1	39	92	5	191	18	46	23	11	1.81
328372--328486	17	6.9	17	72	21	93	19	46	23	10	1.80
340522--340555	6	5.5	6	96	3	59	32	35	32	0	1.58
340526--340567	18	2.3	18	83	0	57	42	33	23	0	1.55
353948--354005	22	2.6	22	86	8	73	53	0	1	44	1.10
354005--354063	19	2.8	20	83	14	75	54	0	5	40	1.23
358560--358598	21	1.9	20	89	5	60	25	0	2	71	0.98
362278--362304	14	1.9	14	100	0	54	51	22	18	7	1.70

Tables:   1   2

The End!