genome.fa.s8754.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008754.1 Hibiscus syriacus cultivar Beakdansim tig00111845_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  290996

Tables:   1   2   

This is table  2  of  2  ( 151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
217691--218161	111	4.2	112	92	1	707	25	14	14	45	1.83
217691--218161	223	2.1	223	89	1	705	25	14	14	45	1.83
218293--218335	20	2.2	20	92	8	72	46	4	23	25	1.71
220460--220544	36	2.4	35	82	5	109	45	27	1	25	1.61
224145--224444	148	2.0	148	94	3	519	47	10	6	36	1.63
224624--224702	35	2.3	35	81	0	95	30	0	22	46	1.52
225575--225640	34	1.9	35	87	9	100	48	7	0	43	1.31
225477--225634	83	1.9	84	89	3	248	44	12	3	39	1.57
232237--232616	189	2.0	189	97	0	715	37	25	9	27	1.87
234178--234218	20	2.1	20	86	13	59	51	4	17	26	1.65
236815--236845	15	2.1	15	93	0	53	29	29	9	32	1.89
237097--237285	98	1.9	98	94	2	335	32	13	15	39	1.86
237308--237364	2	28.5	2	100	0	114	49	0	0	50	1.00
243590--243631	17	2.5	17	100	0	84	40	28	19	11	1.87
244317--244341	12	2.1	12	100	0	50	40	24	16	20	1.91
251397--251429	16	2.1	16	94	0	57	39	12	27	21	1.88
261215--261255	6	6.8	6	89	10	66	17	17	17	48	1.81
263566--263660	6	15.2	6	70	23	54	73	0	17	8	1.07
263545--263637	12	7.8	11	68	18	53	74	0	19	6	1.03
263575--263637	24	2.7	23	80	9	74	77	0	15	6	0.96
263573--263629	29	2.0	29	83	13	73	77	0	15	7	0.98
263630--263659	16	1.9	16	93	6	53	66	0	20	13	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
264917--265220	124	2.4	125	91	0	484	31	17	27	23	1.97
265948--266137	36	5.2	36	87	1	238	36	23	18	21	1.95
266519--266820	51	5.8	51	88	2	379	31	19	26	22	1.98
266820--267043	53	4.2	53	90	2	340	29	13	28	28	1.95
266820--267051	108	2.2	108	89	1	351	29	13	28	28	1.94
266834--267079	108	2.3	108	87	3	334	29	15	26	27	1.96
272562--272708	77	1.9	79	81	5	183	42	6	5	45	1.52
276235--276287	19	2.8	20	74	5	56	0	28	1	69	0.99
286866--286899	5	6.6	5	86	6	50	82	14	0	2	0.79

Tables:   1   2

The End!