genome.fa.s8759.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008759.1 Hibiscus syriacus cultivar Beakdansim tig00111851_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  899239

Tables:   1   2   3   4   

This is table  4  of  4  ( 405 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
808932--809007	31	2.4	32	78	17	86	48	1	0	50	1.09
809081--809142	23	2.6	23	84	5	70	51	0	1	46	1.10
809209--809261	19	2.8	18	78	13	54	58	0	0	41	0.98
809461--809505	15	3.1	15	77	6	56	31	11	6	51	1.63
818647--818738	31	3.1	30	75	10	98	28	16	6	48	1.70
820940--821306	183	2.0	183	94	0	644	27	11	19	41	1.86
822087--822263	97	1.8	98	82	3	232	32	14	11	41	1.82
824522--824602	42	1.9	42	97	0	153	18	16	19	45	1.85
826084--826109	13	2.0	13	100	0	52	53	0	23	23	1.46
834079--834221	60	2.4	60	79	9	148	46	4	13	35	1.65
839318--839419	51	2.0	52	88	5	154	50	5	8	34	1.57
840230--840286	30	1.9	29	85	3	78	38	12	21	28	1.89
840745--840787	22	1.9	23	85	4	61	48	2	4	44	1.36
841140--841393	41	5.9	40	71	14	127	51	7	17	23	1.69
841167--841371	84	2.4	89	80	10	205	52	7	16	23	1.69
847715--847752	18	2.0	19	85	10	51	42	2	0	55	1.14
853348--853406	31	1.9	31	92	0	100	28	6	11	52	1.63
854646--854722	33	2.3	33	81	0	100	24	51	9	14	1.70
856227--856254	2	14.0	2	100	0	56	50	0	0	50	1.00
858873--858898	6	4.3	6	100	0	52	0	34	15	50	1.45
859364--859436	3	24.7	3	91	2	121	64	0	1	34	1.02
859591--860119	118	4.5	118	94	2	883	28	20	15	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
860835--860986	50	3.0	50	98	0	286	38	24	13	23	1.91
862124--862203	12	6.0	13	82	15	92	2	17	0	80	0.83
862120--862198	5	15.6	5	73	21	67	2	17	0	79	0.84
862144--862203	21	3.0	20	83	13	79	1	16	0	81	0.77
862120--862197	20	3.9	20	83	11	106	2	17	0	79	0.84
874479--874504	6	4.3	6	100	0	52	0	34	15	50	1.45
874970--875036	3	22.7	3	89	3	100	68	0	1	29	0.98
875232--875283	24	2.2	24	86	6	70	34	3	9	51	1.53
875455--875536	30	2.8	30	85	5	105	41	12	9	36	1.76
875456--875549	29	3.2	29	79	11	111	39	13	7	39	1.73
876369--876445	29	2.7	29	97	0	145	31	16	11	40	1.85
877172--877284	54	2.1	53	83	6	140	36	9	15	38	1.80
879815--879841	4	6.8	4	100	0	54	25	0	0	74	0.83
879831--879959	67	1.9	69	90	6	210	47	5	4	42	1.47
880750--880874	65	1.9	64	93	1	214	51	8	7	32	1.60
880922--880964	15	2.8	15	92	3	68	69	9	4	16	1.31
882829--882864	18	2.0	18	88	0	54	55	8	19	16	1.66
884487--884541	26	2.1	27	86	10	78	50	1	9	38	1.45
885488--885835	21	16.8	20	83	9	298	20	21	22	34	1.97
885587--885832	63	3.9	62	89	4	345	20	22	22	34	1.97
885896--886011	42	2.8	41	89	5	171	31	23	22	22	1.98
885896--885992	21	4.6	21	94	0	167	31	22	22	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
898532--898589	19	2.8	19	82	10	62	31	1	5	62	1.27

Tables:   1   2   3   4

The End!