genome.fa.s876.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000876.1 Hibiscus syriacus cultivar Beakdansim tig00001695_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  362593

Tables:   1   2   

This is table  2  of  2  ( 185 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
217875--217943	18	3.8	18	75	5	59	47	37	4	10	1.57
217887--218044	6	26.2	6	71	6	59	45	39	6	8	1.61
217898--218004	30	3.5	30	79	14	96	45	37	6	10	1.64
217887--218023	36	3.8	36	82	5	125	45	38	6	8	1.61
217929--217980	24	2.2	24	85	0	68	46	36	5	11	1.64
217945--218044	37	2.7	36	86	7	130	43	40	9	8	1.66
217965--218044	12	6.6	12	76	8	72	42	42	8	6	1.61
218001--218083	12	6.9	12	75	4	51	40	38	8	12	1.73
217977--218086	18	6.1	18	73	6	89	42	38	8	10	1.70
218303--218369	2	33.5	2	100	0	134	49	0	0	50	1.00
220702--220782	20	4.1	20	81	0	99	16	11	17	55	1.68
220875--220929	23	2.4	23	93	0	92	23	14	27	34	1.94
221467--221504	13	2.8	13	82	17	51	60	0	2	36	1.11
226863--226945	29	2.8	29	90	1	130	42	10	14	32	1.80
231630--231712	29	2.8	29	90	1	130	42	10	14	32	1.80
233761--233835	35	2.2	34	90	2	114	34	5	14	45	1.68
240837--240910	34	2.1	37	85	7	100	32	17	27	22	1.97
241558--241614	21	2.9	19	75	10	51	24	10	24	40	1.87
241659--241706	23	2.1	23	92	0	78	16	29	25	29	1.97
247008--247069	30	2.1	30	100	0	124	12	12	33	40	1.82
247008--247059	18	3.2	18	70	30	62	13	11	34	40	1.81
259198--259235	18	2.1	18	95	0	67	44	5	2	47	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
259412--259456	20	2.2	20	84	7	56	51	0	2	46	1.13
262442--262491	25	2.0	25	84	0	64	48	18	8	26	1.75
262550--262579	14	2.1	15	93	6	53	63	10	0	26	1.26
264020--264081	30	2.1	30	82	8	74	35	14	3	46	1.61
264136--264166	15	2.1	15	93	0	53	19	9	0	70	1.14
265365--265389	5	5.0	5	100	0	50	80	20	0	0	0.72
267122--267181	29	2.0	30	87	9	88	25	10	1	63	1.35
267130--267190	30	2.1	28	81	6	68	24	14	1	59	1.45
273211--273277	22	3.0	22	95	2	116	25	28	26	19	1.99
274954--274998	21	2.1	21	87	0	63	15	24	28	31	1.96
278126--278192	22	3.0	22	95	2	116	25	28	26	19	1.99
279878--279918	21	2.0	21	85	0	55	17	24	29	29	1.97
280691--280923	93	2.5	94	95	0	423	40	24	14	21	1.90
284469--284495	7	3.9	7	100	0	54	14	11	29	44	1.80
286199--286250	2	26.0	2	100	0	104	50	0	0	50	1.00
290271--290343	39	1.9	37	83	5	92	36	19	21	21	1.95
295210--295284	39	1.9	39	89	5	116	28	16	14	41	1.87
295961--295991	2	15.5	2	100	0	62	48	0	51	0	1.00
298011--298409	173	2.3	174	97	0	755	28	27	15	28	1.96
298351--298707	141	2.5	140	77	1	365	28	27	13	31	1.94
307244--307282	21	1.9	21	89	5	62	15	5	35	43	1.69
307344--307402	28	2.1	28	93	0	100	52	8	6	32	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
308658--308720	29	2.2	29	91	0	99	28	19	9	42	1.82
309400--309467	29	2.3	31	82	5	86	47	7	14	30	1.72
312283--312523	109	2.2	107	80	10	258	19	12	19	48	1.80
315749--315789	16	2.6	16	88	3	57	29	21	12	36	1.90
316921--316969	24	2.0	24	92	0	80	32	30	18	18	1.95
319181--319255	35	2.1	35	92	0	123	30	0	25	44	1.55
322764--322826	31	2.0	32	81	3	74	60	6	19	14	1.55
324023--324080	22	2.6	22	86	5	73	27	18	17	36	1.94
327538--327595	29	2.1	29	80	6	66	25	5	17	51	1.65
329445--329492	21	2.4	21	83	13	57	20	0	2	77	0.88
339926--339959	15	2.3	15	94	0	59	41	14	23	20	1.89
340010--340095	19	4.5	19	89	0	136	34	15	17	32	1.91
340011--340095	38	2.2	38	95	0	152	35	15	16	32	1.90
340781--340852	23	3.1	23	74	9	74	19	19	26	34	1.96
341168--341220	27	2.0	27	100	0	106	24	0	11	64	1.26
351636--351678	17	2.3	20	80	11	56	60	0	0	39	0.97
351631--351679	20	2.5	20	77	9	57	59	0	0	40	0.98
357521--357577	29	1.9	30	82	3	71	24	17	7	50	1.70
358930--359045	60	1.9	60	84	3	153	32	15	17	34	1.91
360496--360542	20	2.3	20	96	0	85	59	8	14	17	1.59
360681--360723	20	2.3	19	88	11	63	51	11	16	20	1.75

Tables:   1   2

The End!