genome.fa.s8762.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008762.1 Hibiscus syriacus cultivar Beakdansim tig00111855_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  187765

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1263--1293	15	2.1	15	93	0	53	54	0	0	45	0.99
5200--5236	16	2.5	15	84	16	51	59	0	37	2	1.12
15623--15689	34	2.0	34	82	5	82	16	11	28	43	1.83
27043--27081	19	2.1	19	100	0	78	35	0	5	58	1.20
27936--28020	2	43.0	2	97	2	163	49	0	0	50	1.00
31091--31115	13	1.9	13	100	0	50	40	12	8	40	1.72
51747--51802	15	3.8	14	76	23	53	60	1	1	35	1.17
53177--53203	14	1.9	14	100	0	54	37	22	18	22	1.95
55428--55473	21	2.1	22	84	8	58	34	6	0	58	1.24
55494--55527	16	2.1	16	89	10	52	41	2	0	55	1.15
60465--60500	18	2.0	18	100	0	72	27	5	5	61	1.41
60713--60766	22	2.4	23	79	11	67	37	24	9	29	1.86
66019--66059	16	2.6	16	100	0	82	56	26	12	4	1.56
66377--66468	34	2.7	34	87	0	112	55	16	13	15	1.70
67989--68047	31	1.9	31	85	0	82	28	28	6	35	1.83
67988--68055	31	2.2	31	78	5	75	25	30	10	33	1.89
69456--69546	24	3.8	23	79	13	78	18	6	3	71	1.22
77267--77328	23	2.9	21	85	7	81	22	35	24	17	1.95
81198--81248	14	3.7	14	82	12	61	80	1	15	1	0.89
81197--81248	7	7.4	7	76	8	52	80	1	15	1	0.88
81321--81458	69	2.0	69	91	0	222	37	22	13	26	1.91
82382--82499	32	3.7	31	80	6	121	27	13	21	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82389--82477	30	2.8	31	86	5	117	29	10	20	40	1.85
83166--83412	106	2.3	106	88	1	352	36	22	17	23	1.95
83560--83745	101	1.8	101	86	4	268	27	18	13	40	1.88
83739--83773	15	2.3	15	90	0	52	20	20	20	40	1.92
83918--84002	35	2.4	35	94	3	145	38	20	9	31	1.84
85389--85435	4	11.8	4	78	17	53	21	2	0	76	0.89
85389--85460	36	2.0	36	84	10	94	20	4	1	73	1.07
87479--87547	31	2.2	31	92	0	111	30	21	27	20	1.98
88470--88505	18	2.1	18	89	5	56	41	0	2	55	1.14
105963--105988	13	2.0	13	100	0	52	23	15	30	30	1.95
111646--111690	21	2.1	21	87	0	63	31	28	24	15	1.96
113376--113588	103	2.1	103	94	0	372	27	14	22	36	1.92
113605--113672	23	3.0	23	91	0	100	20	27	26	25	1.99
118970--119019	24	2.1	24	85	7	66	28	2	12	58	1.45
125840--125882	20	2.1	21	87	8	63	13	16	0	69	1.19
128140--128182	20	2.2	20	86	0	59	34	20	13	30	1.92
129934--129983	24	2.1	24	85	7	66	28	2	12	58	1.45
135501--135529	2	14.5	2	100	0	58	51	0	0	48	1.00
137342--137425	41	2.0	41	88	0	123	41	19	10	28	1.84
139573--139601	15	2.0	15	93	6	51	34	13	3	48	1.60
141706--141772	28	2.4	28	97	2	127	55	0	0	44	0.99
142050--142084	17	2.1	17	100	0	70	40	11	14	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153313--153370	21	2.7	22	73	7	66	67	3	6	22	1.30
155061--155136	35	2.2	35	92	0	125	39	23	1	35	1.63
155533--155780	130	1.9	130	93	0	424	36	15	12	35	1.86
156243--156276	16	2.0	18	88	11	54	64	5	2	26	1.30
156977--157349	188	2.0	188	97	0	701	42	19	13	25	1.87
159024--159050	6	4.5	6	100	0	54	85	0	14	0	0.61
159428--159466	19	2.1	19	100	0	78	30	0	58	10	1.31
162194--162236	22	2.0	21	86	4	59	62	9	0	27	1.25
162311--162352	22	1.9	22	90	0	66	59	4	0	35	1.19
162313--162360	22	2.2	22	84	0	60	62	4	0	33	1.14
163611--163666	27	2.1	27	83	6	69	51	1	0	46	1.11
169367--169429	31	2.0	31	100	0	126	38	30	22	9	1.86
175379--175571	18	10.9	18	71	10	121	49	30	3	16	1.61
175383--175571	9	21.4	9	76	4	107	49	31	3	16	1.61
175372--175422	27	2.0	25	84	7	66	47	31	3	17	1.66
175489--175582	27	3.6	27	74	5	68	48	28	3	19	1.64
175383--175748	36	10.2	36	67	13	164	48	29	4	17	1.68
175610--175754	9	16.2	9	73	13	63	44	28	6	20	1.76
175634--175688	17	3.1	17	76	7	56	45	30	5	18	1.72
175614--175715	44	2.3	44	86	8	136	45	31	5	17	1.72
175383--175742	18	20.6	18	68	17	113	48	30	4	17	1.67
175812--175876	17	3.8	16	71	18	51	44	24	3	27	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
175809--175876	26	2.6	26	70	9	66	44	25	2	27	1.68
175830--175854	9	2.8	9	100	0	50	36	24	8	32	1.84
175890--175925	18	2.0	18	94	0	63	22	5	19	52	1.66
175986--176028	9	4.8	9	79	0	50	11	6	32	48	1.66
175986--176040	18	3.1	18	84	5	67	10	7	29	52	1.63
175988--176040	27	2.0	26	82	10	63	11	5	30	52	1.60
176212--176258	22	2.1	22	84	7	60	25	2	0	72	0.96
179006--179034	7	4.1	7	100	0	58	0	27	58	13	1.36
179030--179107	7	11.1	7	98	0	129	3	10	42	43	1.56
179023--179086	21	3.0	21	95	0	92	0	15	43	40	1.47
179107--179162	28	1.9	29	85	7	78	60	7	5	26	1.44
180122--180156	9	3.9	9	88	0	52	25	0	8	65	1.21
180088--180161	27	2.7	27	77	4	78	28	0	13	58	1.36
180185--180405	27	8.1	27	68	16	84	22	1	22	53	1.56
180139--180259	45	2.7	46	81	6	124	19	4	21	55	1.59
180148--180245	36	2.7	36	83	0	124	18	5	22	54	1.63
180322--180379	18	3.2	17	75	4	53	25	1	18	53	1.54
180365--180406	18	2.4	17	77	14	50	23	0	21	54	1.44
180332--180416	27	3.1	27	78	9	77	24	1	20	54	1.52
181220--181282	31	2.0	31	100	0	126	38	30	22	9	1.86
183880--184568	7	101.3	7	90	7	1027	0	28	56	15	1.39
184568--187765	7	471.7	7	89	8	4873	13	0	43	42	1.47

Tables:   1

The End!