genome.fa.s8775.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008775.1 Hibiscus syriacus cultivar Beakdansim tig00111887_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  150276

Tables:   1   2   

This is table  1  of  2  ( 128 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73--562	52	9.3	55	81	9	558	28	26	13	31	1.94
73--562	209	2.3	210	81	7	570	28	26	13	31	1.94
1473--1529	7	7.5	8	79	20	52	12	7	0	80	0.89
1481--1529	8	6.7	7	81	13	55	14	4	0	81	0.83
1469--1552	36	2.3	36	74	13	82	10	13	0	76	1.03
11632--11657	1	26.0	1	100	0	52	100	0	0	0	0.00
15100--15139	10	4.1	10	87	3	55	65	12	7	15	1.47
15332--15374	14	3.1	14	79	0	50	60	13	11	13	1.59
15340--15389	24	2.1	24	88	0	73	54	14	16	16	1.72
16398--16432	18	1.9	18	88	11	54	48	2	0	48	1.16
16423--16478	25	2.2	25	100	0	112	41	0	7	51	1.29
16760--16794	2	17.5	2	100	0	70	48	0	0	51	1.00
18223--18294	2	36.0	2	100	0	144	50	0	0	50	1.00
21365--21404	19	2.1	19	95	0	71	45	12	7	35	1.70
22244--22294	21	2.5	21	90	9	79	25	19	23	31	1.98
22283--22479	103	1.9	103	80	12	226	34	16	19	29	1.94
25018--25051	17	1.9	18	88	5	52	32	0	2	64	1.08
25135--25184	26	1.9	26	95	0	91	46	8	6	40	1.58
26091--26124	17	1.9	18	88	5	52	41	0	0	58	0.98
35016--35071	8	7.5	8	79	16	50	76	0	3	19	0.93
35031--35074	8	5.2	8	86	2	52	79	0	4	15	0.89
35016--35074	24	2.5	24	84	10	70	77	0	3	18	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35016--35073	15	3.7	15	80	8	62	77	0	3	18	0.91
41060--41107	23	2.1	23	88	0	69	35	12	18	33	1.89
41489--41540	23	2.3	22	90	6	77	44	19	1	34	1.62
41499--41561	23	2.7	23	90	0	90	38	19	6	36	1.77
41964--42050	39	2.2	39	93	0	147	17	12	20	49	1.79
42308--42344	18	2.1	18	89	0	56	51	10	5	32	1.60
42733--42783	25	2.0	25	92	0	84	39	19	7	33	1.81
43051--43102	23	2.3	22	90	6	77	44	19	1	34	1.62
43061--43123	23	2.7	23	90	0	90	38	19	6	36	1.77
43482--43533	23	2.3	22	90	6	77	44	19	1	34	1.62
43492--43554	23	2.7	23	90	0	90	38	19	6	36	1.77
43912--43983	23	3.2	23	84	2	83	40	20	5	33	1.76
44339--44410	23	3.2	23	84	2	83	38	20	5	34	1.76
42818--44695	431	4.4	431	98	0	3626	39	12	8	39	1.73
42815--44695	856	2.2	862	98	0	3641	39	12	8	39	1.73
44697--44762	25	2.6	25	80	0	87	42	13	9	34	1.76
47263--47675	183	2.3	183	94	0	720	33	15	14	36	1.88
49131--49211	3	27.0	3	75	0	72	23	34	6	35	1.80
49135--49223	12	7.4	12	84	0	88	21	34	7	35	1.82
49135--49226	18	5.1	18	77	0	76	20	34	7	36	1.81
49147--49223	36	2.1	36	90	0	118	20	35	9	35	1.85
49135--49226	6	15.3	6	79	0	67	20	34	7	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50681--52049	199	6.9	199	97	0	2575	31	16	15	36	1.90
50681--52049	396	3.4	398	97	1	2602	31	16	15	36	1.90
52168--52216	19	2.6	19	93	0	80	57	10	2	30	1.43
53998--54063	33	2.0	33	90	0	105	22	48	0	28	1.51
54097--54161	21	3.1	21	80	6	69	15	29	15	40	1.88
56385--56427	20	2.3	18	82	17	61	18	16	11	53	1.72
56390--56436	20	2.3	20	89	10	78	17	17	10	55	1.69
56670--57111	226	2.0	227	92	2	746	40	7	7	45	1.59
59118--59191	2	37.0	2	100	0	148	50	0	0	50	1.00
62104--62128	12	2.1	12	100	0	50	40	0	16	44	1.47
63409--63477	2	34.5	2	100	0	138	50	0	0	49	1.00
64808--64852	15	3.0	15	93	0	72	40	6	13	40	1.71
64866--64915	20	2.5	20	96	0	91	42	10	14	34	1.78
65196--65246	23	2.2	23	86	6	68	37	3	3	54	1.37
65242--65407	29	6.0	27	72	21	98	51	1	0	45	1.16
65250--65306	28	2.1	28	87	12	84	52	1	0	45	1.11
65318--65362	23	2.0	23	90	0	72	44	2	0	53	1.13
65368--65426	23	2.6	22	81	10	57	54	0	0	45	0.99
70591--70679	23	4.0	23	68	21	73	47	0	3	49	1.18
73308--73341	2	17.0	2	100	0	68	50	0	0	50	1.00
73840--73879	18	2.2	18	90	0	62	45	2	10	42	1.51
73976--74031	23	2.4	23	80	11	60	42	12	3	41	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76268--76312	19	2.4	19	92	0	72	31	4	17	46	1.68
89156--89243	3	29.7	3	97	2	169	34	0	0	65	0.93
92651--92705	20	2.8	20	75	10	67	38	30	10	20	1.87
92854--92921	20	3.4	20	100	0	136	25	20	14	39	1.91
93011--93063	22	2.4	22	87	0	70	18	39	16	24	1.91
93365--93421	20	2.8	20	89	0	78	15	17	22	43	1.87
94939--95066	42	3.0	42	85	6	163	25	33	14	25	1.95
95223--95373	63	2.4	62	81	5	178	20	10	34	34	1.87
95285--95392	41	2.6	42	82	7	141	17	12	37	33	1.87
95285--95392	42	2.6	42	81	10	141	17	12	37	33	1.87
95204--95393	21	9.1	21	70	12	122	20	11	34	33	1.88
95502--95547	4	11.5	4	80	0	56	32	0	0	67	0.91
96727--96778	26	1.9	28	88	7	81	3	21	13	61	1.48
96984--97037	24	2.2	24	90	0	81	40	18	18	22	1.91
97948--97999	20	2.6	19	93	6	86	30	7	25	36	1.84
98102--98142	22	1.9	21	85	5	55	31	12	19	36	1.89
99135--99221	41	2.1	41	97	0	165	19	19	24	36	1.95
99111--99286	62	2.9	62	91	0	282	18	19	24	37	1.94
99213--99380	41	3.8	41	80	17	210	20	18	25	35	1.95
99266--99376	53	2.1	53	94	0	195	21	17	25	36	1.95
99319--99383	21	3.1	21	75	4	78	21	16	26	35	1.95
99372--99424	22	2.4	22	100	0	106	16	18	28	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99897--99992	39	2.5	39	100	0	192	32	17	19	30	1.95
100099--100137	6	6.5	6	100	0	78	0	15	51	33	1.44
100227--100425	21	9.7	21	81	3	199	37	25	19	18	1.93
100248--100570	41	7.9	41	80	6	352	36	23	20	18	1.95
100311--100504	61	3.2	60	82	10	243	36	23	22	18	1.95
100461--100566	20	5.2	20	68	12	81	36	25	18	18	1.94
100864--100980	54	2.2	54	98	0	225	31	7	18	41	1.79
101218--101253	19	1.9	18	88	5	54	66	0	2	30	1.06
101898--101949	25	2.1	25	82	13	63	53	25	5	15	1.63
105309--105338	2	14.5	2	93	6	51	50	0	3	46	1.18
108140--108211	31	2.3	31	87	0	99	40	9	11	38	1.74
109878--109921	23	2.0	23	82	8	56	20	18	11	50	1.77
113391--113476	34	2.5	34	96	1	154	60	0	0	39	0.97
113823--113860	19	2.0	19	85	10	51	39	5	5	50	1.48
113869--113996	59	2.1	60	82	2	150	32	14	16	36	1.88
115359--115424	30	2.2	30	86	0	96	37	10	27	24	1.88
115518--115546	2	14.5	2	100	0	58	51	0	0	48	1.00
116300--116375	22	3.5	22	100	0	152	39	13	9	38	1.76
117501--117551	22	2.3	22	93	0	84	31	25	25	17	1.97
117509--117553	22	2.0	22	100	0	90	26	26	26	20	1.99
117773--117832	30	2.0	31	90	3	95	33	23	6	36	1.81
117847--117918	29	2.5	29	93	0	117	38	12	9	38	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118222--118372	68	2.2	67	85	8	191	15	27	26	30	1.96
118352--118393	21	2.0	21	85	0	57	16	26	28	28	1.97
124421--124471	22	2.3	22	93	0	84	31	25	25	17	1.97
124429--124473	22	2.0	22	100	0	90	26	26	26	20	1.99
124693--124752	30	2.0	31	90	3	95	33	23	6	36	1.81
124767--124838	29	2.5	29	93	0	117	38	12	9	38	1.76
125142--125291	67	2.2	67	86	6	198	16	26	26	30	1.96
125271--125312	21	2.0	21	85	0	57	16	26	28	28	1.97
131325--131375	22	2.3	22	93	0	84	31	25	25	17	1.97
131333--131377	22	2.0	22	100	0	90	26	26	26	20	1.99

Tables:   1   2